Pairwise Alignments

Query, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

Subject, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

 Score =  891 bits (2302), Expect = 0.0
 Identities = 442/725 (60%), Positives = 563/725 (77%), Gaps = 5/725 (0%)

Query: 5   DLSLLLNSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVT 64
           D SLLL+ LND QR+AVAA L   L+LAGAGSGKTRVLVHRIAWL+ VE+ASP S+++VT
Sbjct: 3   DPSLLLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62

Query: 65  FTNKAAAEMRQRIEQLLGINPAGMWVGTFHGLAHRLLRAHWQEARLVQNFQILDSDDQQR 124
           FTNKAAAEMR RIE+L+    +GMW GTFHG+ HR+LRAH+ +A+L+++FQI+DSDDQQR
Sbjct: 63  FTNKAAAEMRGRIEELMHGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQR 122

Query: 125 LIKRVMRELGLDEQKWPARQAQWFINGQKDEGLRPQHIQAGGDLFLATMREVYTAYEQAC 184
           L+KR+++   LD+++WPARQ  W+IN QKDEGLRP HI A  D    T  ++YTAY++AC
Sbjct: 123 LLKRLIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHINAF-DPVTQTYLKLYTAYQEAC 181

Query: 185 ERAGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLARGGD 244
           +RAG++DF+E+LLRAL+L R +  + EHYQ RF+H+LVDEFQDTNA+QYAWLR++A    
Sbjct: 182 DRAGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQS 241

Query: 245 SLMAVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALIANNS 304
           ++M VGDDDQSIYGWRGA++ENI ++T +FP    IRLEQNYRST  IL+A+N LIANNS
Sbjct: 242 NVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNS 301

Query: 305 GRLGKELWTDMGEGEPLTLYAAYNEHDEARYVVETIESLVKQGNARNEIAILYRSNAQSR 364
            R+GK+LWTD   GEP+++Y+AYNE DEAR+VV  I+   +QG    + AILYR+NAQSR
Sbjct: 302 ERMGKQLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYRNNAQSR 361

Query: 365 VLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIGEK 424
           VLEEALL+  + YRIYGG RFFER EIK+A++YLRLI  R +D A ERVIN PPRG+G+K
Sbjct: 362 VLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDK 421

Query: 425 TVEAIREHARHSQLSMWEAMCQLIAAKALKGRAASALGAFIELIEGLAAKVVDMPLHTMT 484
           T+E IR  AR    ++W+A   L+  + L GRAASAL  F+ELI  L  + +DMPLH +T
Sbjct: 422 TLETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLT 481

Query: 485 QTTIEQSGLITYHQEEKGEKGQARVENLEELVSAARNFESTDEDADLSPLSAFLGHASLE 544
              ++ SGL+  +Q+EKGEK +AR+ENLEELV+A R FE  +E  +++ L+AFL HA+LE
Sbjct: 482 DHAVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALE 541

Query: 545 AGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRLAYV 604
           AG+ QADEH+D++QLMTLHSAKGLEFP VF+VG+EEG+FP +MS EE GRLEEERRL YV
Sbjct: 542 AGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCYV 601

Query: 605 GITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIPAGLVQEVRLSNSVSRPFGGAKTAT 664
           G+TRAM++L +TYAE RRLYG + Y+K SRF+RE+P G + EVR+   VSRP     T  
Sbjct: 602 GMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCLDEVRMKAQVSRP---TSTGR 658

Query: 665 NSNLFANASIPQTAFNLGQRVQHAVFGEGVILNFEGSGAQARVQVNF-AEGSKWLMLGYA 723
            S      S  +T FNLG RV+H  FGEG I+NFEGSG Q+RVQV F  EG KWL+  YA
Sbjct: 659 FSQTVVKESFNETGFNLGSRVRHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAYA 718

Query: 724 KLEAV 728
           +LE V
Sbjct: 719 RLEKV 723