Pairwise Alignments

Query, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

Subject, 794 a.a., ATP-dependent DNA helicase, Rep family from Synechococcus elongatus PCC 7942

 Score =  445 bits (1144), Expect = e-129
 Identities = 287/774 (37%), Positives = 416/774 (53%), Gaps = 75/774 (9%)

Query: 10  LNSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKA 69
           L+ LN +QR+AV    G  LV+AGAGSGKTR L  RIA L++  +  P +IL+VTFTNKA
Sbjct: 6   LSQLNTSQRRAVEHYSGPLLVVAGAGSGKTRALTFRIAHLLRQHRVDPENILAVTFTNKA 65

Query: 70  AAEMRQRIEQLLGINPA-----------------------------GMWVGTFHGLAHRL 100
           A EM++R+E+L     A                              +W+GTFH +  R+
Sbjct: 66  AKEMKERLERLFAQQLAELQYGQPFTTLREIEKTQLRSRVYREVTKDLWIGTFHAICARI 125

Query: 101 LRAHWQE------ARLVQNFQILDSDDQQRLIKRVM-RELGLDEQKWPARQAQWFINGQK 153
           LR    +       R  + F I D +D Q LIK ++  +L LD +K+  +  ++ I+  K
Sbjct: 126 LRFDIDKYCDPNGRRWTKQFSIFDENDVQGLIKEIVGNQLNLDTKKFEPKSVRYTISSAK 185

Query: 154 DEGLRPQHIQAGGDLFLA-TMREVYTAYEQACERAGVIDFSELLLRALDLWRDHPGLLEH 212
           + G  P   +     +    + EVY  Y         +DF +LLL  + L+R +  +L +
Sbjct: 186 NNGWSPDEFERQQPNYRGRVIGEVYRRYLDQLAANNALDFDDLLLIPVQLFRQNEQVLAY 245

Query: 213 YQRRFRHVLVDEFQDTNAVQYAWLRLLARGGD-----------SLMAVGDDDQSIYGWRG 261
           + +RFRHVLVDE+QDTN  QY  +RLL   G            S+  VGD DQSIY +R 
Sbjct: 246 WHQRFRHVLVDEYQDTNRTQYDLIRLLTTNGAETRDFDQWNHRSVFVVGDADQSIYSFRA 305

Query: 262 AKIENIHQYTADFPDA-------EMIRLEQNYRSTGGILKAANALIANNSGRLGKELWTD 314
           A    +  +  DF D         M++LE+NYRST  IL+AAN LI NN+ R+ K L   
Sbjct: 306 ADFTILMGFQDDFGDRLPDDDTRTMVKLEENYRSTENILQAANELIRNNTERIDKVLRPT 365

Query: 315 MGEGEPLTLYAAYNEHDEARYVVETIESLVKQGNARN--EIAILYRSNAQSRVLEEALLR 372
            G GE +  Y A +E  EA YVV+ I  L +Q    N  + AILYR+NAQSR  E++L+R
Sbjct: 366 RGSGEAIACYRADDEMAEAEYVVQQIRQLEQQHPELNWGDFAILYRTNAQSRAFEDSLVR 425

Query: 373 ERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIGEKTVEAIREH 432
             +PY + GG RF++R E+K+ +AYLR I    +  +L RV+NVP RG+G+ T+  + + 
Sbjct: 426 WNVPYTVIGGLRFYDRREVKDILAYLRAIANPFDAVSLLRVVNVPKRGVGKTTIGRLVDA 485

Query: 433 ARHSQLSMWEAMCQLIAAKALKGRAASALGAFIELIEGLAAKVVDMPLHTMTQTTIEQSG 492
           A+   + +WE +      + L GR+A  +  F  L++    +  ++    + +  +E SG
Sbjct: 486 AQELNVPLWEILSDSETVQNLAGRSAKGILEFANLVQHFQDQADELRPSELIRQLLEASG 545

Query: 493 LITYHQEEKGEKGQARVENLEELVSAARNFESTDEDADLSPLSAFLGHASLEAGDTQADE 552
            I   Q    ++ + R  NLEELV+AA   E  ++D     L  FLG ASL A D    E
Sbjct: 546 YIAELQRSGTDEDEDRRRNLEELVNAAVQHEEENDDPS---LIGFLGTASL-ASDADNKE 601

Query: 553 HEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRLAYVGITRAMRQ 612
               + LMTLH++KGLEFP VFLVG+E+GLFP   SL++P  +EEERRL YVGITRA  +
Sbjct: 602 ANQQVSLMTLHASKGLEFPVVFLVGLEQGLFPSFRSLDDPRAVEEERRLCYVGITRAQER 661

Query: 613 LVMTYAETRRLYGSETYNKV-SRFVREIPAGLV-----QEVRLSNSVSRP--FGGAKTAT 664
           L +T+A  RRL+G      + S F+ E+PA L+     Q  R + +  +P      + + 
Sbjct: 662 LFLTHASARRLWGGGREPAIPSNFLSELPAELIVGHSPQTRRQTQANFKPPVTHERRASL 721

Query: 665 NSNLFANAS------IPQTAFNLGQRVQHAVFGEGVILNFEGSGAQARVQVNFA 712
              + ANA+       P   + +G R+QH  FG G I    G+G +  + V F+
Sbjct: 722 RDRVAANAAKVQQVQQPARHWQVGDRLQHRQFGVGRITRIFGAGDRQSIVVQFS 775