Pairwise Alignments

Query, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

Subject, 766 a.a., ATP-dependent helicase PcrA from Synechococcus elongatus PCC 7942

 Score =  181 bits (458), Expect = 2e-49
 Identities = 190/674 (28%), Positives = 294/674 (43%), Gaps = 93/674 (13%)

Query: 16  AQRQAVAA-TLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMR 74
           AQ+QAV     GR +V+A AG+GKT  +  RI  L+   +  P  IL+ TF   A  ++R
Sbjct: 6   AQQQAVIDHEQGRAVVVAVAGAGKTTTIARRIGRLVHQVEVPPGRILATTFNRYARGQIR 65

Query: 75  QRIEQLLGINPAGMWVGTFHGLAHRLLRAHWQEARLVQNFQILDSD-DQQRLIKRVMREL 133
           +++ QL    P G+ V T H LA ++L+       L  + ++     D Q  I++   +L
Sbjct: 66  EKLNQLAV--PVGVAVRTLHALAQQILKLEADPWPLAADGEMRRLFYDMQSAIRQGRLDL 123

Query: 134 GLDEQKWPARQA-----QWFIN--GQKDEGLR---------PQHIQAGGDLFL-----AT 172
            LD      RQ      + F+N  G     LR         P H+Q    L +       
Sbjct: 124 SLDLSSHEQRQIADLNEESFLNYLGYLKGDLRFSAWQFEQLPTHLQTVATLEVWPESQRW 183

Query: 173 MREVYTAYEQACERAGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQ 232
           +     A+EQ  + A +  F +LL+ A  L     G+ E  + RF  ++VDE+QD N  Q
Sbjct: 184 LNVCVDAFEQCRQEARLRSFDDLLVDACRLLCADMGIRERVRSRFDFLIVDEYQDINRAQ 243

Query: 233 YAWLRLLARGGDSLMAVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGI 292
              + +L     +LM VGDDDQ+IY WRGA+ + I     D    +   L++N+RS    
Sbjct: 244 NLIISVLDEAQQNLMVVGDDDQTIYEWRGARPQLILDKLRDRQWVQ-YTLDRNFRSRAPQ 302

Query: 293 LKAANALIANNSGRLGKELWTDMGEGEPLTLYAAYNEHDEARYVVETIESLVKQGNARNE 352
           L  ANALI +N  R  K+L             +  +  D+A  + E I     +G    E
Sbjct: 303 LLLANALIRHNRLRSPKQLQGTKAWQHHCEWRSFPSGSDQAAAIAEQILEYRDRGKPLAE 362

Query: 353 IAILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALER 412
           + IL R+ AQ+ ++E+ L+  ++PY I G Q F+ R E+K  +AYL   E   N     R
Sbjct: 363 MVILIRTYAQTPLIEQQLIAAQLPYVIPGSQPFYLRREVKLLLAYLEFAEAERN-----R 417

Query: 413 VINVPPRGIGEKTVEAIREHA--------RHSQLSMWEAMC---QLIAAKALKGRAASAL 461
           V N       ++  +  RE +        R   LSM +       L  A  +  R    L
Sbjct: 418 VQNGLTPATRDRYDQLFRETSSRPSRYLKRPELLSMLQEALDNPHLPLATIISQRCRDRL 477

Query: 462 GAFIELIEGLAAKVVDMPLHTMTQTTIEQSGLITYHQEEKGEKGQARVENLEEL----VS 517
           G                  +   Q  ++  G +   Q        A++E L +L    + 
Sbjct: 478 GR-----------------NRSLQRWLDYLGWVLGAQPSSAAAAIAKIEQLIDLRRWIID 520

Query: 518 AARNFESTDEDA-DLSPLSAFLGH----------ASLEAGDTQADEHEDSIQLMTLHSAK 566
           +  + ES  + A  +  L AF G           A+L+     +DE    + L+T+  AK
Sbjct: 521 SDISPESGAQKALIIDALQAFAGDRAVQSWLQEMAALQEQPPLSDE-ASGVNLLTVFKAK 579

Query: 567 GLEFPYVFLVGMEEGLFPHKMSLEE---PGR---------------LEEERRLAYVGITR 608
           GLE+  VF+  ++ G++P   S E    PGR                EEERR+ YV +TR
Sbjct: 580 GLEWDTVFIPDLDAGIYPFGSSRESESGPGRNSFDPLSEVALDRSLQEEERRILYVALTR 639

Query: 609 AMRQLVMTYAETRR 622
           ++  L ++ A  +R
Sbjct: 640 SINNLHLSSATNQR 653