Pairwise Alignments

Query, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

Subject, 857 a.a., DNA helicase II protein from Sinorhizobium meliloti 1021

 Score =  477 bits (1227), Expect = e-138
 Identities = 280/690 (40%), Positives = 402/690 (58%), Gaps = 64/690 (9%)

Query: 10  LNSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKA 69
           ++ LN  QR+AV A  G  LVLAGAG+GKTRVL  RIA ++   +A P  IL+VTFTNKA
Sbjct: 44  VSGLNPEQREAVEALEGPVLVLAGAGTGKTRVLTTRIAHILSTGRAYPSQILAVTFTNKA 103

Query: 70  AAEMRQRIEQLLGINPAGM-WVGTFHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKR 128
           A EM++RI  L+G    GM W+GTFH +  +LLR H +   L  +F ILD+DD  RLIK+
Sbjct: 104 AREMKERIGVLVGHAVEGMPWLGTFHSIGVKLLRRHAELVGLRSDFTILDTDDVVRLIKQ 163

Query: 129 VMRELGLDEQKWPARQAQWFINGQKDEGLRPQHIQAGGDLFLATM--REVYTAYEQACER 186
           +++  GLD+++WPA+Q    I+  K++GL P  I  G     A    RE+Y AY+     
Sbjct: 164 LIQAEGLDDKRWPAKQFAGMIDTWKNKGLDPSQIPEGDARAFANGKGRELYAAYQNRLLT 223

Query: 187 AGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLARGGDS- 245
               DF +LLL  + ++R +P +L+ Y  +FR++LVDE+QDTN  QY WLRLLA+   + 
Sbjct: 224 LNACDFGDLLLHPIRMFRANPDVLKEYHAKFRYILVDEYQDTNTAQYMWLRLLAQQTQAS 283

Query: 246 ----------------------------------------------LMAVGDDDQSIYGW 259
                                                         +  VGDDDQSIYGW
Sbjct: 284 RNRPSSGLPATFSPSDGEKGQAARSQSPLSPSERGEGRGEGQPTVNICCVGDDDQSIYGW 343

Query: 260 RGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALIANNSGRLGKELWTDMG--E 317
           RGA+++NI ++  DFP A++I+LE+NYRST  IL AA  LIA+N GRLGK L+T+    +
Sbjct: 344 RGAEVDNILRFEKDFPGAKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLFTERTNPD 403

Query: 318 GEPLTLYAAYNEHDEARYVVETIESLVKQGNARNEIAILYRSNAQSRVLEEALLRERIPY 377
            E + ++AA++  +EAR + E IE L ++ +  N+I+IL R++ Q R  E+  +   + Y
Sbjct: 404 DEKVHVHAAWDSEEEARAIGEEIEQLQRKKHNLNDISILVRASFQMREFEDRFVTLGLNY 463

Query: 378 RIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIGEKTVEAIREHARHSQ 437
           R+ GG RF+ER EI++AMAY RL+    +D A ER++N P RG+GE TV  + ++AR   
Sbjct: 464 RVIGGPRFYERLEIRDAMAYFRLVCQPADDLAFERIVNTPKRGLGETTVRTLHDYARARD 523

Query: 438 LSMWEAMCQLIAAKALKGRAASALGAFIELIEGLAAKVVDMPLHTMTQTTIEQSGLITYH 497
           + M  A   ++    LK +A   L   +         +   P   + +  +++SG     
Sbjct: 524 IPMLAAASDIVETDELKPKARKGLFDVVADFRRWQTLLETTPHTELAERILDESGYTAMW 583

Query: 498 QEEKGEKGQARVENLEELVSAARNFESTDEDADLSPLSAFLGHASLEAGDTQADEHEDSI 557
           Q +K  +   R+ENL+EL+ +   FES         +  FL H +L   D + +E+ D++
Sbjct: 584 QADKSAEAPGRLENLKELIRSMEAFES---------MRGFLEHVAL-VMDAEQNENMDAV 633

Query: 558 QLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGR--LEEERRLAYVGITRAMRQLVM 615
            +MTLHSAKGLEF  VFL G EEGLFPH+ +L+E GR  LEEERRLAYVGITRA R+  +
Sbjct: 634 SIMTLHSAKGLEFDTVFLPGWEEGLFPHQRALDEGGRAGLEEERRLAYVGITRAKRRCHI 693

Query: 616 TYAETRRLYGSETYNKVSRFVREIPAGLVQ 645
            +   RR++G       SRF+ E+P   V+
Sbjct: 694 WFVSNRRIHGLWQSTLPSRFLDELPIAHVE 723