Pairwise Alignments

Query, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

Subject, 689 a.a., UvrD2 DNA helicase from Sinorhizobium meliloti 1021

 Score =  277 bits (709), Expect = 1e-78
 Identities = 222/687 (32%), Positives = 333/687 (48%), Gaps = 78/687 (11%)

Query: 10  LNSLNDAQRQAVAATLGRQ--------LVLAGAGSGKTRVLVHRIAWLIQVEQASPHSIL 61
           L  LN+ QR AV   +G +        L++AGAGSGKT  L HR+A LI V  A P  IL
Sbjct: 7   LEKLNERQRCAVEYGIGAEEGAQAGPLLIIAGAGSGKTNTLAHRVAHLI-VNGADPRRIL 65

Query: 62  SVTFTNKAAAEMRQRIE----QLLGINPAGM-----WVGTFHGLAHRLLRAHWQEARLVQ 112
            +TF+ +AAAEM +R+E    Q+LG +   M     W GTFHG+  RLLR + ++  L  
Sbjct: 66  LMTFSRRAAAEMSRRVERICAQVLGRSSGMMTDALSWAGTFHGIGARLLRIYAEQIGLNA 125

Query: 113 NFQILDSDDQQRLIKRVMRELGLD--EQKWPARQAQWFINGQK-------DEGLRPQHIQ 163
            F I D +D   LI  +  ELG    E ++P +     I  +        +E LR  +  
Sbjct: 126 EFTIHDREDSADLINLIRHELGFSKTESRFPTKGTCLAIYSRTVNAEMRLNEVLRSWYPW 185

Query: 164 AGGDLFLATMREVYTAYEQACERAGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVD 223
             G  +   ++E++  Y +A +   V+D+ +LLL    +  D   L +    RF +VLVD
Sbjct: 186 VAG--WEQQLQELFAGYVEAKQAQNVLDYDDLLLYWAQMVSD-ASLADDIGNRFDYVLVD 242

Query: 224 EFQDTNAVQYAWLRLLARGGDSLMAVGDDDQSIYGWRGAKIENIHQYTADF-PDAEMIRL 282
           E+QDTN +Q + L  L   G  L  VGDD QSIY +R A + NI  +   F P AE++ L
Sbjct: 243 EYQDTNKLQSSVLLALKPDGRGLTVVGDDAQSIYSFRAATVRNILDFPKQFAPAAEIVTL 302

Query: 283 EQNYRSTGGILKAANALIANNSGRLGKELWTDMGEGEPLTLYAAYNEHDEARYVVETIES 342
           ++NYRST  IL AAN +I     R  K LWTD    E   L    +E D+A  +VE + +
Sbjct: 303 DRNYRSTQPILAAANGVIDLARERFTKNLWTDRESAERPKLLTVKDEADQANCIVEQVLA 362

Query: 343 LVKQGNARNEIAILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIE 402
             + G    + A+L+R+++ S  LE  L R  IP+  +GG +F + A +K+ +A LR  +
Sbjct: 363 NRESGMLLKQQAVLFRTSSHSGPLEVELTRRNIPFVKFGGLKFLDSAHVKDMLAVLRFAQ 422

Query: 403 GRGNDAALERVINVPPRGIGEKTVEAIREHARHSQLSMWEAMCQLIAAKALKGRAASALG 462
              +  A  R++ + P G+G +T   I +      ++        +       R+ +   
Sbjct: 423 NPRDRVAGFRLLQMLP-GVGPQTAGKILD-----TIAADPEPLMALGEVPAPPRSGTDWM 476

Query: 463 AFIELIEGLAAKVVDMPLHTMTQTTIEQSGL-ITYHQEEKGEKGQARVENLEELVSAARN 521
           + +EL++ L       P      T IE + +    H E   E  + R  +L +L   A  
Sbjct: 477 SLVELLQALRKPGSAWP------TEIEMARMWYEPHLERIHEDAETRRADLVQLEQIAAG 530

Query: 522 FESTDEDADLSPLSAFLGHASLEAGDTQADE------HEDSIQLMTLHSAKGLEFPYVFL 575
           + S +          FL   +L+  D  +D+       ED + L T+HSAKG E+  VF+
Sbjct: 531 YPSRER---------FLTELTLDPPDATSDQAGVPLLDEDYLILSTIHSAKGQEWRSVFM 581

Query: 576 VGMEEGLFPHKMSLEEPGRLEEERRLAYVGITRAMRQLVMTYAE-----------TRRLY 624
           + + +G  P  ++      LEEERRL YVG+TRA  QL +   +            R +Y
Sbjct: 582 LNVVDGCIPSDLATGTSHELEEERRLLYVGMTRAKDQLALMVPQRFFTGGQHAQGDRHVY 641

Query: 625 GSETYNKVSRFVREIPAGLVQEVRLSN 651
            S T        R IPA L+Q    +N
Sbjct: 642 ASRT--------RFIPATLLQFFESAN 660