Pairwise Alignments

Query, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

Subject, 768 a.a., UvrD/REP helicase (NCBI) from Rhodospirillum rubrum S1H

 Score =  503 bits (1295), Expect = e-146
 Identities = 301/753 (39%), Positives = 436/753 (57%), Gaps = 52/753 (6%)

Query: 10  LNSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKA 69
           L  LN  QR AV  T G  LVL+GAG+GKTRVL  R+A ++      P  +L+VTFTN+A
Sbjct: 25  LAGLNPEQRAAVTTTDGPVLVLSGAGTGKTRVLTARLAQILATRPVRPWQVLAVTFTNRA 84

Query: 70  AAEMRQRIEQLLGINPAGMWVGTFHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKRV 129
           A EMR+R   ++G     +W+GTFH L  R+LR H     L   F ILD+DDQ RL+K++
Sbjct: 85  AREMRERAGAMIGPMAEQVWLGTFHALGVRMLRRHGDLVGLRSGFTILDADDQLRLLKQI 144

Query: 130 MRELGLDEQKWPARQAQWFINGQKDEGLRPQHIQAG-GDLFLATMREV--YTAYEQACER 186
           +   G+D +KW  +     I   KD+GL P+ + AG G    A  R V  Y  Y+Q    
Sbjct: 145 LEAEGIDTKKWTPQAGMGLIQRWKDKGLLPEAVPAGDGGREYAGGRAVDLYKQYQQRLAV 204

Query: 187 AGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLARGGDSL 246
               DF +LLL  L ++  HP +L  Y + F ++LVDE+QDTN  QY WLRLLARG  ++
Sbjct: 205 VNAADFGDLLLHCLTIFTKHPDVLADYSKMFHYILVDEYQDTNVAQYLWLRLLARGHGNI 264

Query: 247 MAVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALIANNSGR 306
             VGDDDQSIY WRGA++ NI ++ ADFP A ++RLE+NYRST  IL AA+ LI +N GR
Sbjct: 265 CCVGDDDQSIYSWRGAEVGNILRFEADFPGATVVRLERNYRSTPTILAAASGLIRHNKGR 324

Query: 307 LGKELWTDMGE--GEPLTLYAAYNEHDEARYVVETIESLVKQGNARNEIAILYRSNAQSR 364
           LGK+L    G+  G+ + +   ++  +EAR VV+ IE+  + G+  N +A+L R+  Q+R
Sbjct: 325 LGKDLRAGEGDEAGDAVIVRGLWDGEEEARRVVDDIETRQRAGDRLNGMAVLVRAGFQTR 384

Query: 365 VLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIGEK 424
             EE L+   +PYR+ GG RF+ER EI++A+AYLRL+    +  A ER+IN+P RG+G+ 
Sbjct: 385 AFEERLILAGVPYRVVGGARFYERQEIRDAIAYLRLVAQPDDSLAFERIINLPRRGLGDA 444

Query: 425 TVEAIREHARHSQLSMWEAMCQLIAAKALKGRAASALGAFIELIEGLAAKVVDMPLHTMT 484
           +++ +   +R + +S+  A  + I    L+ +A  AL AF++ +    +    M    + 
Sbjct: 445 SLQTLMRASRMASISLMRAAREAIETDELRPQARKALRAFLDDMGRWRSLADAMAPDELC 504

Query: 485 QTTIEQSGLITYHQEEKGEKGQARVENLEELVSAARNFESTDEDADLSPLSAFLGHASLE 544
            T +++SG +   +++K    Q RVENL+ELVSA + FES         L AFL H SL 
Sbjct: 505 GTVLDESGYLEMWRKDKSPDAQGRVENLKELVSALKEFES---------LGAFLEHVSL- 554

Query: 545 AGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPG--RLEEERRLA 602
             D +A   ED++ LMTLH+AKGLEF  VFL G EE +FPH+ +L+E G   LEEERRLA
Sbjct: 555 VMDNEARATEDAVTLMTLHAAKGLEFDTVFLPGWEEEIFPHRRALDENGAEALEEERRLA 614

Query: 603 YVGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIPAGLVQEVRLS---NSVSRPF-- 657
           YVG+TRA ++ ++++   RR+Y        SRF+ E+P  +V+    S    S ++ +  
Sbjct: 615 YVGLTRARKRAIISFVANRRVYNEWRACLPSRFIDELPPEVVERDSASGVYGSGAQGYAD 674

Query: 658 ---------------GGAKTATNSNLFANASIP----------QTAFNLGQRVQHAVFGE 692
                          GG   A  + + A    P          Q +   G RV H  FG 
Sbjct: 675 APGGWGRLGGPGSWGGGWGNAAPARVPAAGDTPWQTRDRSGDDQPSLRPGDRVFHDKFGG 734

Query: 693 GVILNFEGSGAQARVQVNFAE-GSKWLMLGYAK 724
           G +L    +  Q R++++F + G K +M G+ +
Sbjct: 735 GTVL----AADQGRLEIDFDKAGIKKVMGGFVR 763