Pairwise Alignments

Query, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

Subject, 770 a.a., 3'-5' exonuclease from Parabacteroides merdae CL09T00C40

 Score =  458 bits (1179), Expect = e-133
 Identities = 281/766 (36%), Positives = 437/766 (57%), Gaps = 48/766 (6%)

Query: 10  LNSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKA 69
           L  LN++QR+AV  T G  LV+AGAGSGKTRVL ++IA+L++ +   P SIL++TFTNKA
Sbjct: 5   LKQLNESQREAVVYTDGPSLVVAGAGSGKTRVLTYKIAYLLR-QGLPPQSILALTFTNKA 63

Query: 70  AAEMRQRIEQLLGINPAG-MWVGTFHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKR 128
           A EM+ RI  L        +W+GTFH +  R+LR+  +      NF I D+ D + L++ 
Sbjct: 64  AREMKDRIASLTDERMVRRLWMGTFHSVFSRILRSEAECIGYPSNFTIYDATDSKSLLRS 123

Query: 129 VMRELGLDEQKWPARQAQWFINGQKDEGL-------RPQHIQAGGDLFLATMREVYTAYE 181
           +M+E+ LD++ +     Q  I+  K+  +         + +Q   D  +  +RE+Y  Y+
Sbjct: 124 IMKEMQLDDKVYRPGMVQGRISNAKNALITYKAYEQNKELVQHDIDSKVPLLREIYKRYQ 183

Query: 182 QACERAGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLAR 241
             C++AG +DF +LLL+   L+RDHP +LE Y+  F+ VLVDE+QDTN  Q+  ++ L  
Sbjct: 184 NRCQQAGAMDFDDLLLQTNILFRDHPDVLEKYRSFFQFVLVDEYQDTNFAQHLIVQRLCE 243

Query: 242 GGDSLMAVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALIA 301
               +  VGDD QSIY +RGA I+NI Q+   +P   + +LE+NYRST  I+ AAN+LI 
Sbjct: 244 VHRRICVVGDDAQSIYSFRGANIDNILQFKNQYPGCRIFKLERNYRSTQNIVNAANSLIH 303

Query: 302 NNSGRLGKELWTDMGEGEPLTLYAAYNEHDEARYVVETIESLVKQGNARNEIAILYRSNA 361
            N+ ++ K ++++  EG  +++ ++Y++++E   V   I  +  Q     + AILYR+NA
Sbjct: 304 KNTKQIPKTVYSEKEEGSKVSICSSYSDYEEGYAVAGKINDMRMQNYDYADFAILYRTNA 363

Query: 362 QSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGI 421
           QSR+LEEAL +  IPY+IYGG  F++R E+K+ ++YLRLI    ++ A +RVIN P RGI
Sbjct: 364 QSRILEEALRKRGIPYKIYGGLSFYQRKEVKDVISYLRLIVNPHDEEAFKRVINYPARGI 423

Query: 422 GEKTVEAIREHARHSQLSMWEAMCQLIA-AKALKGRAASALGAFIELIEGLAAKVVDMPL 480
           G+ T+  +   A    +S+W  +   I  A  +    A  L  F ELI G   + V +  
Sbjct: 424 GDTTLNKLVVAATDHNVSLWTVLNDPIGYALPVNNGTAKKLSDFRELISGFIERNVKLSA 483

Query: 481 HTMTQTTIEQSGLITYHQEEKGEKGQARVENLEELVSAARNF--ESTDEDADLSPLSAFL 538
             +    +++SG+++   +++  +G ++ ENL+EL+     F     +E  +   L+ FL
Sbjct: 484 EEIAAAVVKESGIVSTLFQDRSVEGISKQENLQELLKGIAEFCEIRREEGTEHVSLADFL 543

Query: 539 GHASLEAG-DTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEE 597
              SL    D   +E  + + +MT+H+AKGLEF  VF+VG+EE LFP  MS + P  +EE
Sbjct: 544 SEVSLLTDQDNDKEEQANKVTMMTVHAAKGLEFRNVFVVGLEEDLFPSAMSKDNPRAVEE 603

Query: 598 ERRLAYVGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIPA-------------GLV 644
           ERRL YV ITRA    V+T+A +R   G  T    SRF+++I               GL+
Sbjct: 604 ERRLFYVAITRAEENCVLTHARSRYRNGQSTMCSPSRFLKDIDPKYIYTSADAVTTNGLL 663

Query: 645 QEVRLS--------------NSVSRPFG------GAKTATNSNLFANASIPQ-TAFNLGQ 683
              R S              + V++  G        +TA+ S+  +++S P  +  ++G 
Sbjct: 664 ATRRSSVFQQPKAMEGEAYVSPVAQAVGRQARLTRMETASLSSAPSSSSAPALSGLHVGA 723

Query: 684 RVQHAVFGEGVILNFEGSGAQARVQVNFAE-GSKWLMLGYAKLEAV 728
           +V+H  FGEG +   EG G  A+  V+FA  G K L+L +A+L  V
Sbjct: 724 KVRHDRFGEGEVTAIEGEGGNAKATVSFAHFGQKQLLLKFARLTIV 769