Pairwise Alignments

Query, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

Subject, 787 a.a., DNA helicase II UvrD from Phaeobacter inhibens DSM 17395

 Score =  492 bits (1267), Expect = e-143
 Identities = 299/743 (40%), Positives = 420/743 (56%), Gaps = 63/743 (8%)

Query: 10  LNSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKA 69
           L+ LN AQR AV    G  L+LAGAG+GKT+ L  RI  L+    A P+ IL+VTFTNKA
Sbjct: 28  LDGLNPAQRAAVECLEGPVLMLAGAGTGKTKALTARIVHLLTTGTAKPNEILAVTFTNKA 87

Query: 70  AAEMRQRIEQLLGINPAGM-WVGTFHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKR 128
           A EM++R+  +LG    GM W+GTFH +  +LLR H +   L  NF ILD+DDQ RL+K+
Sbjct: 88  AREMKERVAGMLGQAVEGMPWLGTFHSICVKLLRRHAELVGLKSNFTILDADDQIRLLKQ 147

Query: 129 VMRELGLDEQKWPARQAQWFINGQKDEGLRPQHIQAGGDLFLATMREV--YTAYEQACER 186
           +++  G+D+++WPAR     I+  K+  L P  +    D      R V  Y  Y+   + 
Sbjct: 148 LIKAEGIDDKRWPARMLAGVIDDWKNRALTPSKVPVS-DASAYNHRGVDFYAQYQARLKD 206

Query: 187 AGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLARGGDSL 246
              +DF +LLL  + +++D+P +LE YQR FR ++VDE+QDTN  QY WLRLLA    ++
Sbjct: 207 LNAVDFGDLLLHMVTIFQDNPDVLEQYQRWFRFIMVDEYQDTNVAQYLWLRLLAGAHKNI 266

Query: 247 MAVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALIANNSGR 306
             VGDDDQSIYGWRGA++ NI ++  DFP A ++RLEQNYRST  IL AA+ +I  NSGR
Sbjct: 267 CCVGDDDQSIYGWRGAEVGNILRFEKDFPGANVVRLEQNYRSTEHILSAASGVIRGNSGR 326

Query: 307 LGKELWTDMGEGEPLTLYAAYNEHDEARYVVETIESLVK--QGNA---RNEIAILYRSNA 361
           LGKELWT+   GE + L   ++  +EAR++ E IE++ +  +G A    N +AIL R++ 
Sbjct: 327 LGKELWTEARGGEKVRLIGHWDGEEEARWIGEEIEAMQRGTRGLAPVDLNNMAILVRASH 386

Query: 362 QSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGI 421
           Q R  E+  L   +PYR+ GG RF+ER EI++AMAY R +    +D A ER++N P RG+
Sbjct: 387 QMRAFEDRFLTIGLPYRVIGGPRFYERLEIRDAMAYFRQVISPDDDLAFERIVNTPKRGL 446

Query: 422 GEKTVEAIREHARHSQLSMWEAMCQLIAAKALKGRAASALGAFIELIE--GLAAKVVDMP 479
           G+K  + I+  AR + +S+ E     + +  +KG+   AL   +  +   G  A   D  
Sbjct: 447 GDKAQQTIQTMARSNGVSLVEGARLAVESGQIKGKGGKALHQLVTDLARWGRLAGDADTT 506

Query: 480 LHTMTQTTIEQSGLITYHQEEKGEKGQARVENLEELVSAARNFESTDEDADLSPLSAFLG 539
              + +  +++SG  T  Q +K      R+ENL+ELV A   FE+         L  FL 
Sbjct: 507 HMELAEIILDESGYTTMWQADKNPDSPGRLENLKELVKALEAFEN---------LQGFLE 557

Query: 540 HASLEAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPG--RLEE 597
           H SL   D    +    + +MTLH+AKGLEFP VFL G E+GLFP + S++E G   LEE
Sbjct: 558 HVSL-IMDNDKQDAAQKVSIMTLHAAKGLEFPAVFLPGWEDGLFPSQRSMDESGLKGLEE 616

Query: 598 ERRLAYVGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIPAGLVQEVRLSNSVSRPF 657
           ERRLAYVGITRA     +++A  RR++G       SRF+ E+P   V+ +         +
Sbjct: 617 ERRLAYVGITRAEEICTISFAGNRRVFGQWQSQLPSRFIDELPEENVEVLTPPGLYGGGY 676

Query: 658 --------GGAKTATNSNLFANA--------------------SIPQ------------T 677
                   GGA  +T  +  A A                    S P+            +
Sbjct: 677 GAAAPSGGGGAVRSTIEDRMAAADGYNSPGWKRMQSRAGERGLSQPRESKSSVIDLTATS 736

Query: 678 AFNLGQRVQHAVFGEGVILNFEG 700
           AF +G+RV H  FG G I   EG
Sbjct: 737 AFMVGERVFHQKFGYGAITGIEG 759