Pairwise Alignments

Query, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

Subject, 678 a.a., UvrD/REP helicase (RefSeq) from Shewanella loihica PV-4

 Score =  132 bits (331), Expect = 7e-35
 Identities = 172/637 (27%), Positives = 276/637 (43%), Gaps = 82/637 (12%)

Query: 17  QRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQR 76
           Q + V    G  L+ A  GSGKT  LV R+  LI+     P SIL + +   A      +
Sbjct: 9   QTRVVRHDAGHALIKAVPGSGKTTTLVKRVERLIKTG-VEPGSILILMYNKSATVSFSDK 67

Query: 77  IEQLLGINPAGMWVGTFHGLAHRLLRAHWQEARLVQNFQILDSDDQ-QRLIKRVMR---- 131
           ++  L  + A   V TFH LA +++    ++    +   I   + +   L+K+  R    
Sbjct: 68  LKLALK-SDAIPEVRTFHSLALKIVALAERQQLTPKKMLITPGNYRYDELVKQAYRVGCS 126

Query: 132 -ELGLDEQKWPARQAQWFINGQKDEGLRPQHIQAGGDLFLATMR----EVYTAYEQACER 186
            + G  EQ       + F++  +   + P    A  D   + ++      Y  Y +  E 
Sbjct: 127 YDSGYIEQS-DITDFETFVSRCRASAVTPA--DAAADPTFSKIKPEFIRAYGCYCELLEA 183

Query: 187 AGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLARGGDSL 246
            G+  F + ++ A+ L R +PGL+     RF+H++VDE+QD N VQ+  +RLL +   S+
Sbjct: 184 NGLRTFEDSMIEAVSLLRIYPGLVA----RFKHIIVDEYQDVNLVQHEMIRLLTKPDTSV 239

Query: 247 MAVGDDDQSIYGWRGAKIENIH-QYTADFPDAEMIRLEQNYRSTGGILKAANALIANNSG 305
           M VGD +Q IY WRGA+ + +   +   FP+  + +L   +R    +   AN++I  NS 
Sbjct: 240 MVVGDLNQCIYEWRGAQPDFMDGLFEQQFPNTTVFQLSCTFRFGHELSLIANSVIRRNSS 299

Query: 306 RLGKELWTDMGEGEPLTLYAAYNEHDEARYVVETIESLVKQGNARNEIAILYRSNAQSRV 365
           +L     T +    P T       H +   + E + ++  +  ++   AIL RSNA+   
Sbjct: 300 KL-----TRLCVSHPSTPKTEVKLHLD-NCLSEVLSAIATENGSQ---AILSRSNARLTE 350

Query: 366 LEEALLRERIPYR-IYGGQRFFERAEIKNAM--------AYLRLIEGRGNDAALERVINV 416
           +E  L      YR + G    + R+EI   +          LRLIE   N      ++  
Sbjct: 351 VELVLRLCGRTYRYLNGSSSLYSRSEIGLLVVGVLLCVYGDLRLIE---NHPCKREMLYG 407

Query: 417 PPRGIGEKTVEAIREHARHSQLSMWEAMCQLIAAKALKGRAASALGAFIELIEGLAA--- 473
             R  G +  +   + A        +A+   +   ++ GR         E +E LA+   
Sbjct: 408 FLREAGIRWQKGQVKEA-------LDALMTQVDVFSVLGRLFENSPHQRERLERLASVRN 460

Query: 474 KVVDMPLHTMTQTTIEQSGLITYHQEEKGEKGQARVENLEELVSAARNFESTDEDADLSP 533
           K  D  L +     +  +G I    E  G     R  + + L    R  +  +E    +P
Sbjct: 461 KDDDSVLASNVLQHLSLAGFI----EGVGSDSVRRTASNDRL----RGVDRIEELLISNP 512

Query: 534 LSA--FLGHASLEAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFP------- 584
           + A  FL +  L   D  AD   + I L T+H +KGLE+ +V L+G+ +  FP       
Sbjct: 513 IDARTFL-NLILHPQDISAD--SEPITLATIHGSKGLEWDHVILIGLNDCEFPGGKPDSG 569

Query: 585 --------HKMSLEEPGRLEEERRLAYVGITRAMRQL 613
                     +S EE   LE ERRL YVGITRA  QL
Sbjct: 570 TQLPALTSESISNEE---LEVERRLFYVGITRAKHQL 603