Pairwise Alignments

Query, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

Subject, 670 a.a., ATP-dependent DNA helicase Rep (RefSeq) from Shewanella loihica PV-4

 Score =  397 bits (1021), Expect = e-115
 Identities = 253/637 (39%), Positives = 356/637 (55%), Gaps = 13/637 (2%)

Query: 13  LNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAE 72
           LN  Q  AV    G  LVLAGAGSGKTRV++++IA+L+Q       +I +VTFTNKAA E
Sbjct: 3   LNPGQNDAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVQKCGYQARNIAAVTFTNKAARE 62

Query: 73  MRQRIEQLLGINPA-GMWVGTFHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKRVMR 131
           M++R+ Q +G   A G+W+ TFH L   +++  ++   L   F + D  D   L+K  + 
Sbjct: 63  MKERVAQSMGRKEARGLWISTFHTLGLEIIKREYKVVGLKPGFSLFDDQDTLALLKE-LT 121

Query: 132 ELGLDEQKWPARQAQWFINGQKDEGLRPQH-IQAGGDLFLATMREVYTAYEQACERAGVI 190
           E   D  K   R     I+  K + + P   I+   D        +Y  Y Q  +    +
Sbjct: 122 EKEFDGDKDLLRMLMTAISNWKGDLMTPDGAIKTARDEQSQLFALLYQRYAQHMKAYNAL 181

Query: 191 DFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLARGGDSLMAVG 250
           DF +L+L    L R    + E +Q+R +++LVDE+QDTN  QY  ++LL         VG
Sbjct: 182 DFDDLILLPTLLLRHKQEVRERWQKRIQYLLVDEYQDTNTSQYELVKLLVGERARFTVVG 241

Query: 251 DDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALIANNSGRLGKE 310
           DDDQSIY WRGAK +N+     DFP+ ++I+LEQNYRS+  IL+AAN LIANN     K 
Sbjct: 242 DDDQSIYSWRGAKPQNLVLLGKDFPNLKLIKLEQNYRSSQRILRAANILIANNPHVYDKS 301

Query: 311 LWTDMGEGEPLTLYAAYNEHDEA-RYVVETIESLVKQGNARNEIAILYRSNAQSRVLEEA 369
           L++++  GEPL +  A NE  EA R V E I           + AILYR N QSR+LE A
Sbjct: 302 LFSELAYGEPLRVLIAANEEQEAERVVAEMIRHKFVGKTQFGDYAILYRGNHQSRLLERA 361

Query: 370 LLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIGEKTVEAI 429
           L+  RIPY++ GG  FF RAEIK+ MAYLRL+    +D A  RV+N+P RGIG  T+E +
Sbjct: 362 LMTNRIPYKLSGGTSFFGRAEIKDIMAYLRLVVNPDDDNAFLRVVNLPKRGIGPATLERL 421

Query: 430 REHARHSQLSMWEAMCQLIAAKALKGRAASALGAFIE-LIEGLAAKVVDMPLHTMTQTT- 487
             +A    +SM+EA+        L   A SAL  F + +++   A     P+  + Q   
Sbjct: 422 GNYANEQHISMFEAIFHSELNHHLPPAAMSALYQFGKFIVDTGEAATRGEPVEAVKQLIR 481

Query: 488 -IEQSGLITYHQEEKGEKGQARVENLEEL---VSAARNFESTDEDADLSPLSAFLGHASL 543
            I     + Y      +  + R++N+ EL   V+     +  DE   L  +   L    +
Sbjct: 482 HINYEDYL-YETSTSAKAAEMRMKNISELYRWVTEMLEGDELDEGMTLPEVVTRLTLRDM 540

Query: 544 EAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRLAY 603
              +++ DE  D +QLMTLH++KGLEFPYVF+VG+EE + PH+ S++E   +EEERRLAY
Sbjct: 541 MERNSE-DEAGDQVQLMTLHASKGLEFPYVFMVGVEERILPHQTSIDE-DNVEEERRLAY 598

Query: 604 VGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIP 640
           VGITRA R+L       RR +G     + SRF+ E+P
Sbjct: 599 VGITRAQRELWFMICRERRQFGEVMRCEPSRFLMELP 635