Pairwise Alignments

Query, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

Subject, 669 a.a., DNA/RNA helicase, superfamily I from Dechlorosoma suillum PS

 Score =  395 bits (1015), Expect = e-114
 Identities = 241/637 (37%), Positives = 358/637 (56%), Gaps = 17/637 (2%)

Query: 10  LNSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKA 69
           L+SLN  QR+A+    G  LVLAGAGSGKTRV+  +IA+LIQ    +P +I ++TFTNKA
Sbjct: 7   LHSLNPPQREAIYYLDGPLLVLAGAGSGKTRVITQKIAYLIQECGMNPANIAAITFTNKA 66

Query: 70  AAEMRQRIEQLL-GINPAGMWVGTFHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKR 128
           A EM++R+ QLL G + AG+ + TFH L  R+LR   +       F I DS D       
Sbjct: 67  AREMQERVGQLLQGGSTAGLTICTFHSLGVRILREEAKALGYKPKFSIFDSTD----CYS 122

Query: 129 VMRELGLDEQKWPARQAQWFINGQKDEGLRPQHIQAGGDLFLATMR-EVYTAYEQACERA 187
           +  +L     K   R  QW ++G K+    P    A     +  +  + Y  Y    +  
Sbjct: 123 IFADLSASVDKATIRSIQWLVSGWKNAMKSPDQAAAEAKSEIEVLAAKAYRDYAATLKAY 182

Query: 188 GVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLARGGDSLM 247
             +DF +L+L  + L+++HP + + +Q R R++LVDE+QDTNA QY  L+LL        
Sbjct: 183 QAVDFDDLILLPMQLFQEHPKIRDKWQNRLRYLLVDEYQDTNACQYQLLKLLTGPRAMFT 242

Query: 248 AVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALIANNSGRL 307
           AVGDDDQ+IYGWRGA +EN+     D+P+ ++I LEQNYRST  IL+AAN +I NN    
Sbjct: 243 AVGDDDQAIYGWRGADVENLRGLPRDYPNLKLIMLEQNYRSTARILQAANNVIGNNEKLF 302

Query: 308 GKELWTDMGEGEPLT-LYAAYNEHDEARYVVETIESLVKQGNARNEIAILYRSNAQSRVL 366
            K+LW+D+G GE +       NEH+    V++ +    ++ +  ++ AILYRSN Q+R+ 
Sbjct: 303 EKKLWSDLGHGEAIRGSVCRDNEHEAESVVMKLLADKFEKRSKFSDYAILYRSNHQARLF 362

Query: 367 EEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIGEKTV 426
           E  L   R+PY + GG  FFE++EIK+ +AYLRL+  + +D A  R +  P RG+G  T+
Sbjct: 363 ETHLRNNRVPYVMSGGTSFFEKSEIKDVIAYLRLLANQDDDPAFIRAVTTPKRGVGGTTL 422

Query: 427 EAIREHARHSQLSMWEAMCQLIAAKALKGRAASALGAFIELIEGLAAKVVDMPLHTMTQT 486
           EA+  +A    +S++ A  +   A+ +  R    L  F E I  +  + +  P   +   
Sbjct: 423 EALGTYAGERHISLFAAAFEEGFAQRVSHRQLEPLLQFCEFINRVEQRALREPAGEVLND 482

Query: 487 TIEQSGLITY-HQEEKGEKGQARVENLEELVSAARNFESTDEDA--DLSPLSAFLGHASL 543
            +   G   + +  E+     ++  N+ E           DE    DL+   A +     
Sbjct: 483 MLTAIGYEAWLYDHEETRAADSKWGNVREFSQWLAGKGEKDEKTLIDLTQTIALINMLDK 542

Query: 544 EAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRLAY 603
           +  D++     D++QL TLH+AKGLE+  VFLVG+EEG+ PH  S+E  G +EEERRL Y
Sbjct: 543 QNEDSEF----DAVQLSTLHAAKGLEYKNVFLVGVEEGILPHSSSVES-GTVEEERRLMY 597

Query: 604 VGITRAMRQLVMTYAETRRLYGSETYN-KVSRFVREI 639
           VGITRA + L +++ E R+  G E Y  + SRF+ E+
Sbjct: 598 VGITRARQHLHLSWCEKRK-QGKEMYPCEPSRFIAEM 633