Pairwise Alignments

Query, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

Subject, 672 a.a., DNA helicase Rep from Klebsiella michiganensis M5al

 Score =  400 bits (1027), Expect = e-115
 Identities = 252/641 (39%), Positives = 366/641 (57%), Gaps = 22/641 (3%)

Query: 13  LNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAE 72
           LN  Q+QAV    G  LVLAGAGSGKTRV+ ++IA LI+        I +VTFTNKAA E
Sbjct: 3   LNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAARE 62

Query: 73  MRQRIEQLLGINPA-GMWVGTFHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKRVMR 131
           M++R+ Q LG   A G+ + TFH L   +++  +    +  NF + D  DQ  L+K +  
Sbjct: 63  MKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTDQVALLKELTE 122

Query: 132 ELGLDEQKWPARQAQWFINGQKDEGLRPQHIQAGG----DLFLATMREVYTAYEQACERA 187
            L +++ K   +Q    I+  K++   P    AG     D   A    +Y A+ +AC   
Sbjct: 123 GL-IEDDKVVLQQLISTISNWKNDLKTPAQAAAGAKGERDRIFAHCYGLYDAHMKACN-- 179

Query: 188 GVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLARGGDSLM 247
            V+DF +L+L    L + +  + E +Q + R++LVDE+QDTN  QY  ++LL        
Sbjct: 180 -VLDFDDLILLPTLLLQRNEEVRERWQNKIRYLLVDEYQDTNTSQYELVKLLVGQRARFT 238

Query: 248 AVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALIANNSGRL 307
            VGDDDQSIY WRGA+ +N+   + DFP  ++I+LEQNYRS+G ILKAAN LIANN    
Sbjct: 239 VVGDDDQSIYSWRGARPQNLVLLSQDFPALQVIKLEQNYRSSGRILKAANILIANNPHVF 298

Query: 308 GKELWTDMGEGEPLTLYAAYNE-HDEARYVVETIESLVKQGNARNEIAILYRSNAQSRVL 366
            K L++++G G  L + +A NE H+  R   E I        A  + AILYR N QSRV 
Sbjct: 299 EKRLFSELGYGVELKVLSANNEDHEAERVAGELIAHHFINKTAYKDYAILYRGNHQSRVF 358

Query: 367 EEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIGEKTV 426
           E+ L++ RIPY+I GG  FF R EIK+ +AYLR++    +D+A  R++N P R IG  T+
Sbjct: 359 EKMLMQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGSATL 418

Query: 427 EAIREHARHSQLSMWEAMCQLIAAKALKGRAASALGAF---IELIEGLAAKVVDMPLHTM 483
           + + E A     SM+ A   +   + L GR   +L  F   +  I+ L+ +     +  +
Sbjct: 419 QKLGEWAMGRNKSMFTASFDMGLTQTLNGRGYESLTRFTHWLREIQQLSEREPIAAVRDL 478

Query: 484 TQTTIEQSGLITYHQEEKGEKGQARVENLEELVS-AARNFESTDEDADLS---PLSAFLG 539
            +    +S L  Y      +  + R++N+  L +      E +D D  ++    ++ F  
Sbjct: 479 IRGVDYESWL--YETSPSPKAAEMRMKNVNTLFTWMTEMLEGSDIDEPMTLTQVVTRFTL 536

Query: 540 HASLEAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEER 599
              +E G  ++DE  D +QLMTLH++KGLEFPYV+LVGMEEGL PH+ S++E   ++EER
Sbjct: 537 RDMMERG--ESDEETDQVQLMTLHASKGLEFPYVYLVGMEEGLLPHQSSIDE-DNVDEER 593

Query: 600 RLAYVGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIP 640
           RLAYVGITRA ++L  T  + RR YG     + SRF+ E+P
Sbjct: 594 RLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELP 634