Pairwise Alignments

Query, 367 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  154 bits (388), Expect = 4e-42
 Identities = 93/340 (27%), Positives = 172/340 (50%), Gaps = 20/340 (5%)

Query: 27  QRTLRVYNWFDYITPQTLTAFQKDSGVKLVYDIFDTNEALEAKL-LTGNSGYDVVVPSNV 85
           ++TL VY W  Y+  ++L AF++  GV + Y  F+ NE++  KL L   +GYDVV  S  
Sbjct: 22  EQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNESMYTKLKLLKGTGYDVVFASAY 81

Query: 86  FLAKQIEAGVFQPLDRSKLPNWQHLDPALMKLIEANDPGNKFAVPYMYGTVLIGFNPAKV 145
           F+ K    G+   +D +++PN +   P ++ L  A+DP NKF++PY++G   + +N + +
Sbjct: 82  FIEKMGREGLLAEIDHNQIPNMKDAMPTVLGL--AHDPQNKFSLPYIWGITGLYYNSSTL 139

Query: 146 KAALGDNAPVDSWDLIFKEENIAKLKQCGVALLDSPSEILPLALQYLGLPPNSDKPADYK 205
              +   A  D WD  ++++         V L+D   ++  +AL+  G   N+    + K
Sbjct: 140 PNGITKWA--DLWDKQYEQQ---------VMLIDDIRDVFGMALKLNGFSINTKNEEEIK 188

Query: 206 KAEELMLKIRPHITYFHSSKYMADIANGDICVAVGYSGSFSQAANRAREANNGVVVDMRL 265
           KA E ++ ++ ++  ++S        +G+  + + ++G+  Q      E      +   +
Sbjct: 189 KAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGNAYQGQVEMPE------LKFVM 242

Query: 266 PKEGAPIWFDMLAIPKGAANPEDAHTFINYLLRPEVIAPISDFVGYPNPNKDATDKVNPT 325
           P+EGA +W D   IP G+ N   AH FIN++ +PE  A I   +GY +  K     +   
Sbjct: 243 PEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEIVQSLGYASATKGGRALLPAE 302

Query: 326 IRNNPNLYPTAEAMAKLYTLKPLTRNAERARTRAWTRIKS 365
           +R+NP ++P+ E M K   +  +         + W R+++
Sbjct: 303 LRDNPTIFPSDEDMKKGEFINDVGPETLAIYEKYWQRLRN 342