Pairwise Alignments

Query, 367 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 348 a.a., spermidine/putrescine ABC transporter substrate-binding protein PotD from Klebsiella michiganensis M5al

 Score =  194 bits (492), Expect = 4e-54
 Identities = 115/342 (33%), Positives = 186/342 (54%), Gaps = 20/342 (5%)

Query: 1   MVRLKRLLAPFIAATLFAGALHAQAEQRTLRVYNWFDYITPQTLTAFQKDSGVKLVYDIF 60
           M +  R L    A  +   A HA  + +TL  YNW +Y+ P  L  F K++G+K++Y  +
Sbjct: 1   MKKWSRHLLAAGALAVGMSAAHAD-DSKTLYFYNWTEYVPPGLLEQFTKETGIKVIYSTY 59

Query: 61  DTNEALEAKLLTGNSG-YDVVVPSNVFLAKQIEAGVFQPLDRSKLPNWQHLDPALMKLIE 119
           ++NE + AKL T   G YD+VVPS  F+ K  + G+ Q +D+SKL N+ +LDP ++   +
Sbjct: 60  ESNETMYAKLKTYKDGAYDLVVPSTYFVDKMRKEGMLQKIDKSKLSNFGNLDPEMLN--K 117

Query: 120 ANDPGNKFAVPYMYGTVLIGFNPAKVKAALGDNAPVDSWDLIFKEENIAKLKQCGVALLD 179
             DP N +++PY++G   IG N  ++     D   V SW  ++K E  + L      L D
Sbjct: 118 PFDPNNDYSIPYIWGATAIGINSDEI-----DPKTVTSWADLWKPEYKSSL-----LLTD 167

Query: 180 SPSEILPLALQYLGLPPNSDKPADYKKAEELMLKIRPHITYFHSSKYMADIANGDICVAV 239
              E+  +AL+ LG   N+  P + + A   + K+ P++  F+S         G++ + +
Sbjct: 168 DAREVFQVALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGM 227

Query: 240 GYSGSFSQAANRAREANNGVVVDMRLPKEGAPIWFDMLAIPKGAANPEDAHTFINYLLRP 299
            ++GS    A  AR+A  G  +++  PKEG   W D L+IP  A N + A   IN+LLRP
Sbjct: 228 VWNGS----AWVARQA--GTPLEVVWPKEGGIFWMDSLSIPANAKNVDGALKLINFLLRP 281

Query: 300 EVIAPISDFVGYPNPNKDATDKVNPTIRNNPNLYPTAEAMAK 341
           E+   +++ +GYP PN  A   ++P + N+ +LYP A  + K
Sbjct: 282 EIAKQVAETIGYPTPNLAARKMLSPEVANDKSLYPDAATIQK 323