Pairwise Alignments

Query, 692 a.a., junction-specific ATP-dependent DNA helicase from Pseudomonas putida KT2440

Subject, 1150 a.a., transcription-repair coupling factor from Pseudomonas syringae pv. syringae B728a

 Score =  239 bits (611), Expect = 4e-67
 Identities = 160/443 (36%), Positives = 242/443 (54%), Gaps = 38/443 (8%)

Query: 223 HRLAFEELLTHQLSQQRLRESLRSLRAPVLPRATRLQAQ--------------YLANLGF 268
           HRL  E   T Q ++++  E +R + A +L    R  A+              + A   F
Sbjct: 546 HRLGSE---TWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFPF 602

Query: 269 QPTGAQQRVANEIAYDLSQHEPMMRLVQGDVGAGKTVVAALAALQALEAGYQVALMAPTE 328
           + T  QQ   + +  D+   +PM RLV GDVG GKT VA  AA  A+  G QVA++ PT 
Sbjct: 603 EETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTT 662

Query: 329 ILAEQHYITFKRWLEPLGIEVAWLAGKLKGKARAASLEQIANGA-PMVVGTHALFQEEVR 387
           +LA+QHY +F+       + V  ++     K  +A++  +A G   +V+GTH L Q++V+
Sbjct: 663 LLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDDVK 722

Query: 388 FKHLALAIIDEQHRFGVQQRLALRRKGVAGELCPHQLIMTATPIPRTLAMSAYADLDTSV 447
            K+L L IIDE+HRFGV+Q+  L  K +  E+    L +TATPIPRTL M+     D S+
Sbjct: 723 IKNLGLVIIDEEHRFGVRQKEQL--KALRSEV--DILTLTATPIPRTLNMAVSGMRDLSI 778

Query: 448 LDELPPGRTPVNTVLVADSRRFEVVERVRAACAEGRQAYWVCTLIEESEELTCQAAESTY 507
           +   P  R  V T  V +  +  + E +      G Q Y++   ++  E+     AE   
Sbjct: 779 IATPPARRLSVRT-FVMEQNKPTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAE--- 834

Query: 508 EELGSALGELKVGLIHGRMKPAEKAEIMAEFKAGNLQLLVATTVIEVGVDVPNASLMIIE 567
                 + E ++G+ HG+M+  E  ++M++F      +L+A+T+IE G+DVP+A+ +IIE
Sbjct: 835 -----LVPEARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIE 889

Query: 568 NPERLGLAQLHQLRGRVGRGSAVSHCVLLYHPPLSQI---GRERLGIMRETND---GFII 621
             ++ GLAQLHQLRGRVGR    ++  LL  PP  QI     +RL  +  T D   GF++
Sbjct: 890 RADKFGLAQLHQLRGRVGRSHHQAYAYLL-TPPRKQITHDAEKRLEAIANTQDLGAGFVL 948

Query: 622 AEKDLELRGPGEMLGTRQTGLLQ 644
           A  DLE+RG GE+LG  Q+G +Q
Sbjct: 949 ATNDLEIRGAGELLGDGQSGQIQ 971