Pairwise Alignments

Query, 692 a.a., junction-specific ATP-dependent DNA helicase from Pseudomonas putida KT2440

Subject, 1171 a.a., transcription-repair coupling factor from Sinorhizobium meliloti 1021

 Score =  209 bits (533), Expect = 5e-58
 Identities = 146/441 (33%), Positives = 225/441 (51%), Gaps = 21/441 (4%)

Query: 208 DADLDELAEGQHWAQHRLAFEELLTHQLSQQ-RLRESLRSLRAPVLPRATRLQAQYLANL 266
           DA LD+L  G  W   +   ++ L        R+     +  APVL     +  ++ A  
Sbjct: 564 DAVLDKLG-GVAWQARKAKLKKRLLDMAGGLIRIAAERHTRHAPVLAAQDGVYDEFAARF 622

Query: 267 GFQPTGAQQRVANEIAYDLSQHEPMMRLVQGDVGAGKTVVAALAALQALEAGYQVALMAP 326
            +  T  Q    + +  DL +  PM RLV GDVG GKT VA  AA  A   G QVA++ P
Sbjct: 623 PYDETEDQLNSIDAVRDDLGRGRPMDRLVCGDVGFGKTEVALRAAFIAAMNGVQVAVVVP 682

Query: 327 TEILAEQHYITFKRWLEPLGIEVAWLAGKLKGKARAASLEQIANG-APMVVGTHALFQEE 385
           T +LA QH+ TF      L I +   +  +  K  A + +++A G   +VVGTHAL    
Sbjct: 683 TTLLARQHFKTFSDRFRGLPIRIQQASRLVGSKDLALTKKEVAEGKTDIVVGTHALLGSS 742

Query: 386 VRFKHLALAIIDEQHRFGVQQRLALRRKGVAGELCPHQLIMTATPIPRTLAMSAYADLDT 445
           ++F +L L IIDE+  FGV+ +  L+      +   H L ++ATPIPRTL ++     + 
Sbjct: 743 IKFANLGLLIIDEEQHFGVKHKERLKEL----KTDVHVLTLSATPIPRTLQLALTGVREL 798

Query: 446 SVLDELPPGRTPVNTVLVADSRRFEVVERVRAACAEGRQAYWVCTLIEESEELTCQAAES 505
           S++   P  R  V T  ++      + E +      G Q+++VC  + +  E+       
Sbjct: 799 SLITTPPVDRMAVRT-FISPFDALVIRETLMREHYRGGQSFYVCPRVSDLPEI------- 850

Query: 506 TYEELGSALGELKVGLIHGRMKPAEKAEIMAEFKAGNLQLLVATTVIEVGVDVPNASLMI 565
            ++ L S + ELKV + HG+M   E  +IM  F  G   +L++TT++E G+DVP A+ +I
Sbjct: 851 -HDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLI 909

Query: 566 IENPERLGLAQLHQLRGRVGRGS--AVSHCVLLYHPPLSQIGRERLGIMRETND---GFI 620
           +   +  GLAQL+QLRGRVGR    A +   L  +  L+     RL +++  +    GF 
Sbjct: 910 VHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTGPAERRLKVLQSLDTLGAGFQ 969

Query: 621 IAEKDLELRGPGEMLGTRQTG 641
           +A  DL++RG G +LG  Q+G
Sbjct: 970 LASHDLDIRGAGNLLGEEQSG 990