Pairwise Alignments

Query, 692 a.a., junction-specific ATP-dependent DNA helicase from Pseudomonas putida KT2440

Subject, 1177 a.a., Transcription-repair coupling factor (NCBI) from Rhodospirillum rubrum S1H

 Score =  217 bits (552), Expect = 3e-60
 Identities = 149/444 (33%), Positives = 227/444 (51%), Gaps = 25/444 (5%)

Query: 207 ADADLDELAEGQHWAQHRLAFEELLTHQLSQQRLRESLRSLRA-PVLPRATRLQAQYLAN 265
           A   LD+L  G  W   +   ++ +     Q     + R L+   V+     L  ++ A 
Sbjct: 563 AGVQLDKLG-GVAWQARKAKLKQRIRDMAEQLIGVAAARQLKVGEVISPPEGLYDEFAAR 621

Query: 266 LGFQPTGAQQRVANEIAYDLSQHEPMMRLVQGDVGAGKTVVAALAALQALEAGYQVALMA 325
             +  T  Q R   +   DL+   PM RL+ GDVG GKT VA  AA     +G QVA++ 
Sbjct: 622 FPYAETDDQLRAIADTLDDLAAGRPMDRLICGDVGFGKTEVALRAAFATAMSGRQVAVVV 681

Query: 326 PTEILAEQHYITFKRWLEPLGIEVAWLAGKLKGKARAASLEQIANGA-PMVVGTHALFQE 384
           PT +LA QH++TFK     L + +  L+  +  +   A  E++A G   +VVGTHAL  +
Sbjct: 682 PTTLLARQHHLTFKERFAGLPVRIGQLSRLVTARDTKAVKEEMAAGTLDIVVGTHALLAK 741

Query: 385 EVRFKHLALAIIDEQHRFGV--QQRLALRRKGVAGELCPHQLIMTATPIPRTLAMSAYAD 442
            VRF+ L L I+DE+  FGV  ++RL   R  V      H L +TATPIPRTL ++    
Sbjct: 742 TVRFRDLGLLIVDEEQHFGVAHKERLKQMRADV------HVLTLTATPIPRTLQLALTGV 795

Query: 443 LDTSVLDELPPGRTPVNTVLVADSRRFEVVERVRAACAEGRQAYWVCTLIEESEELTCQA 502
            + S++   P  R  V T  V       V E +      G Q ++VC  + + +++    
Sbjct: 796 REMSIIATPPVDRLAVRT-FVLPFDPVVVREAILRERFRGGQCFYVCPRLTDIDKVM--- 851

Query: 503 AESTYEELGSALGELKVGLIHGRMKPAEKAEIMAEFKAGNLQLLVATTVIEVGVDVPNAS 562
                E L + + +++  + HG+M P+   E+M  F  G   +LVAT ++E G+D+P A+
Sbjct: 852 -----ERLTTLVPDIRAVVAHGQMAPSRLEEVMTAFADGQYDVLVATNIVESGLDIPRAN 906

Query: 563 LMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHP--PLSQIGRERLGIMRETND--- 617
            +II   +  GLAQL+QLRGRVGR  A  +  L   P   +S+   +RL +M+  +    
Sbjct: 907 TIIIHRADMFGLAQLYQLRGRVGRARARGYAYLTLPPGRTVSKTAAKRLDVMQTLDTLGA 966

Query: 618 GFIIAEKDLELRGPGEMLGTRQTG 641
           GF +A  DL++RG G +LG  Q+G
Sbjct: 967 GFTLASHDLDIRGAGNLLGDEQSG 990