Pairwise Alignments

Query, 320 a.a., Biopolymer transport protein ExbB from Pseudomonas putida KT2440

Subject, 228 a.a., MotA/TolQ/ExbB proton channel family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  124 bits (310), Expect = 3e-33
 Identities = 79/200 (39%), Positives = 112/200 (56%), Gaps = 6/200 (3%)

Query: 88  MAHDLSPWGMYKNADIVVKIVMIGLAIASIITWTIWIAKGFELMGAKRRLRGEIAQLKKS 147
           M  D+S  G++  A ++VK VM  L   SI++WT+ + +   L GAK +      +    
Sbjct: 1   MQADMSFIGLFLQASLLVKFVMFTLLGLSIMSWTVILQRRSLLTGAKNKSAKFEDKFWSG 60

Query: 148 TTL----KEASEVTNKEGTLAHTLVHDALEEMRLSA-NAREKEGIKERVSFRLERLVHAS 202
             L    KE S   +  G L    V    E  RL+  N++  + + +  S  +   +   
Sbjct: 61  VDLNRLYKELSARPDNTG-LESLFVTGFKEYSRLNKLNSKVPDAVMDGTSRAMRVTLSRE 119

Query: 203 GRTMSSGTGVLATIGSTAPFVGLFGTVWGIMNSFIGIAKTQTTNLAVVAPGIAEALLATA 262
              + +   +LATIGST+P++GLFGTVWGIMNSFI I   +   LA+VAPGIAEAL+ATA
Sbjct: 120 LEKLEANLPLLATIGSTSPYIGLFGTVWGIMNSFIAIGSMENATLAMVAPGIAEALIATA 179

Query: 263 LGLVAAIPAVVIYNVFARSI 282
           +GL AAIPAV+ YN FA  +
Sbjct: 180 MGLFAAIPAVIAYNRFATQV 199