Pairwise Alignments

Query, 240 a.a., Ribonuclease PH from Pseudomonas putida KT2440

Subject, 712 a.a., polyribonucleotide nucleotidyltransferase Pnp from Phaeobacter inhibens DSM 17395

 Score = 53.1 bits (126), Expect = 1e-11
 Identities = 61/248 (24%), Positives = 96/248 (38%), Gaps = 26/248 (10%)

Query: 2   KRPSGRVADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPR----FLKGQGQ 57
           KR  GR    +R+I           GS L   G+T+ +   ++  G        L G  +
Sbjct: 317 KRIDGRSTTDVRAIESETGMLPRTHGSALFTRGETQALAVTTLGTGDDEQFIDALHGNFK 376

Query: 58  GWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDC 117
                 Y   P S GE  +     G  G R +   +L  R+L+A L        T+ V  
Sbjct: 377 SNFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVS 432

Query: 118 DVIQADGGTRTASITGAMVALCDALAVIKKRGGLKGGNPLKHMIAAVSVGMY---QGEAV 174
           ++ +++G +  AS+ G  +++ DA            G PLK  +A V++G+     G   
Sbjct: 433 EITESNGSSSMASVCGGSLSMMDA------------GVPLKAPVAGVAMGLILEDDGSYA 480

Query: 175 LDLDYL--EDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMNEIFE 232
           +  D L  ED   + D  V  T   G   +Q   + A   PE     L  A+ G   I  
Sbjct: 481 ILSDILGDEDHLGDMDFKVAGTDK-GITSLQMDIKVAGITPEIMEKALDQAKDGRLHILG 539

Query: 233 LQQAALAD 240
               AL++
Sbjct: 540 EMAKALSE 547



 Score = 30.4 bits (67), Expect = 1e-04
 Identities = 49/189 (25%), Positives = 73/189 (38%), Gaps = 30/189 (15%)

Query: 18  TRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTAEY-------GMLPRS 70
           T    + A+G+V+   G+T V+  V+      +   GQ    LT  Y       G +P  
Sbjct: 20  TGKVARQADGTVIATLGETSVMANVTFAR---QQKPGQDFFPLTVHYQEKYYAAGKVPGG 76

Query: 71  TGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQADGGTRTAS 130
             +R  R   +      TL   RLI R +R         ++   V C V+  D       
Sbjct: 77  FFKREARPTEK-----ETL-TARLIDRPIRPLFVPGFKNEV--LVMCTVLSHDLVNDPDM 128

Query: 131 ITGAMVALCDALAVIKKRGGLKGGNPLKHMIAAVSVGMYQGEAVLD--LDYLEDSAAETD 188
           +  AM+A   AL +         G P    IAA  VG   GE VL+  +D ++D     D
Sbjct: 129 V--AMIAASAALTL--------SGAPFMGPIAAARVGFEGGEYVLNPTVDDMQDLRLNPD 178

Query: 189 LNVVMTSAG 197
             + +  AG
Sbjct: 179 QRLDLVVAG 187