Pairwise Alignments

Query, 529 a.a., periplasmic dipeptide transport protein from Pseudomonas putida KT2440

Subject, 521 a.a., peptide ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

 Score =  218 bits (556), Expect = 3e-61
 Identities = 166/533 (31%), Positives = 252/533 (47%), Gaps = 31/533 (5%)

Query: 3   VAALSLLFTTLFAAGAAQAAP---LSVCSEASPEGFDVVQYNSLTTTNATADVLMN---R 56
           +A  +L F    AA AA   P   L V   A P+  D    +++T TN    +L+N    
Sbjct: 9   IALAALAFAGAAAAPAAAQTPPDVLVVGQIAEPQSLDP---HTVTATNDFR-ILVNVYDG 64

Query: 57  LVEFDAAQGKVVPSLATSWTVSADGLVYDFTLRDDVKFHSTSYFKPSRKLNADDVLFSFQ 116
           LV F     +V P+LA SW +S DG  Y FTLR  VKFH  S F      +A+ V F+F 
Sbjct: 65  LVRFKDGTLEVEPALAESWKISDDGKTYTFTLRQGVKFHDGSNF------DAEAVKFNFD 118

Query: 117 RMLYPAHAWHKTAPGGYPHAQSLQLGSLIKAIEAPSPNTVRFTLSHPDATFLATLSMGFA 176
           RML   H ++ T P  +P + +    + +KA+     +TV F LS   A FL+ L+    
Sbjct: 119 RMLKKDHPFYDTGP--FPLSFNF---ASVKAVNVLDEHTVEFKLSEAFAPFLSNLAYPTG 173

Query: 177 SIYSAEYADKLLKAGTPEKLNNQPIGTGPFVFQRFQKDAVVRYRANPDYFAGKPAVDPLI 236
            I S    +K  K     +    P GTGPF F  +  +  V    NPDY+     +  ++
Sbjct: 174 LIVSPVAVEKHGK-----EYGRSPSGTGPFKFVEWLSNQRVVVERNPDYWDSAAKLQAVV 228

Query: 237 FAITTDANVRLQKLKRGECQVALSPKPLDIAEAGQDGNLKVATTPAFMTAFVAINSQHPP 296
           F   TDAN R+ ++  G   V +   P ++A   QD N  VA        F  +N++  P
Sbjct: 229 FRPITDANTRVAEMMAGGIDVMVEVPPDNLATFEQDANFAVAEQAGPHVWFTILNTKQGP 288

Query: 297 LDKPEVRQAINLAFDRQAYLKAVFEDSAVAANGPYPPNTWSYAKDLPGYPLDLKKAKALL 356
                VRQA N A ++Q  +  V   +A  A GP PP        +  Y  D +KAKALL
Sbjct: 289 FADKRVRQAANYAVNKQTLVDDVLRGTATVAAGPIPPAFNWVESSVEPYAHDPEKAKALL 348

Query: 357 AKAGLAEGFSTTIWTRPSGSLLNPNPSLGAQMLQADLAKIGIKAEIRVIEWGELIRRAK- 415
           A+AG+ E    T +    GS +    ++GA  +QADL  +G K +I   EW   + R   
Sbjct: 349 AEAGV-ENPQVTFYVTEGGSGMLDPITMGA-AIQADLQAVGFKVKIETYEWNTFLGRVNP 406

Query: 416 --AGEHDLLFMGWAGDNGDPDNFLSPQFSCAAVESGTNFARFCDSRLDQLISAGRTTNDQ 473
              G+ D+  M W  ++ D   +L+ +      + G N   + + +LD+L+   R + DQ
Sbjct: 407 GLEGKADMAEMAWMTNDPDTVPYLTLRTDAMPDKGGFNSGYYSNPQLDELLEKARRSTDQ 466

Query: 474 SVRSRLYQQAQTLIQQQALWVPLAHPTAATLLRQGVEGYQVSPFGRLDFSKVT 526
           + R +LY + Q+++   A W+ +A+     +    V+G+++ P   LD   VT
Sbjct: 467 AERGKLYGEVQSIVHDDAPWLFVANWKQNAVTTAAVKGFKLQPSFLLDLHGVT 519