Pairwise Alignments

Query, 555 a.a., GGDEF domain protein from Pseudomonas putida KT2440

Subject, 890 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  302 bits (773), Expect = 4e-86
 Identities = 163/418 (38%), Positives = 257/418 (61%), Gaps = 4/418 (0%)

Query: 120 LQRLAEQDPLTGIANRQGFQALLNARLAENEGRGVALGHLDLDNFRHVNDALGHQSGDRL 179
           ++RLA  D LT + NR  F   L  R A      + L  +D+DNF+ +ND+LGHQ+GD+L
Sbjct: 460 IERLAYTDNLTNLGNRPYFIRSLEERFAAGAEPRLCLLLVDIDNFKRINDSLGHQTGDKL 519

Query: 180 ILQVVARLKHQLEAGDQLARLGSDEFALLIDTRRDANRAEWIAERIVEALAEPYWIDGES 239
           +  +  RL++ L     LAR  S+EFALL D   + +    +A++++  L +P ++D + 
Sbjct: 520 LTSLARRLRNGLSQQSVLARFASNEFALLFDDM-ELDEGLRLADQVLRVLDKPLFVDKQL 578

Query: 240 LLLGCSLGIAHARAQSGADP--LMWHAHIAMRQAKGSQGCTFHVFNERINRNARSLADLE 297
           + +  SLG+A    Q G DP  LM HA  A+ +AK +      +F E ++  A     +E
Sbjct: 579 ISVSASLGLA-CSPQHGRDPETLMKHAGQALHKAKANGKNQVQIFTEALHAEANYKLFVE 637

Query: 298 SELRRALRRDELELHYQPRLNLADGRIVGLEALVRWRHAERGLLPPSEFVPLAEQSGLIV 357
           + LRRAL ++ELE+ YQP+L L  G++ GLEAL+RW H E+G++ P +F+ +AE++GLI+
Sbjct: 638 NNLRRALTQNELEVFYQPKLCLRSGQLQGLEALLRWNHPEKGMIRPDQFISVAEETGLII 697

Query: 358 PLGYWVISRALRDMQALCERGLEPLHMAVNLSFRQFQDSQLLATLSRLILEHGVDARWLE 417
           P+G WV+  A R    L   G     +A+NLS +QF D  LL +++ ++LE  +    LE
Sbjct: 698 PIGKWVLREACRMGVRLSALGHGKPQIAINLSPKQFSDPDLLGSIASILLEEQLSPGQLE 757

Query: 418 FELTETAVMRRNEVVRQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPITLLKVDRSFVA 477
            ELTE+ ++   E  RQ +  L  LG+  ++DDFGTG+SS  +L   PI ++K+DRSF+ 
Sbjct: 758 LELTESLLLDATEETRQQLIGLKALGLTLAMDDFGTGYSSLSYLKKFPIDVIKIDRSFIK 817

Query: 478 EMEMREENRKLVHAMINLAHNLNLEVVAEGVESEEQLTLLRGFGCDQVQGFLVSRPLP 535
           ++   +++ ++  A+I +A  L+L+VVAEG+E+ EQL  LR   CD  QG+L  +P+P
Sbjct: 818 DIPDNQDDMEITSAVIAMARKLHLKVVAEGIETAEQLKFLRHHRCDIGQGYLFDKPIP 875