Pairwise Alignments

Query, 555 a.a., GGDEF domain protein from Pseudomonas putida KT2440

Subject, 917 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) from Synechococcus elongatus PCC 7942

 Score =  285 bits (728), Expect = 7e-81
 Identities = 156/435 (35%), Positives = 252/435 (57%), Gaps = 5/435 (1%)

Query: 120 LQRLAEQDPLTGIANRQ-GFQALLNAR-LAENEGRGVALGHLDLDNFRHVNDALGHQSGD 177
           L   A  D LT + NR      L  A  L+E     V +  LDLD F+++ND LGH  GD
Sbjct: 481 LDHQANYDSLTDLPNRSLALDRLRQATALSERSNDTVIVMLLDLDRFKNINDTLGHSYGD 540

Query: 178 RLILQVVARLKHQLEAGDQLARLGSDEFALLIDTRRDANRAEWIAERIVEALAEPYWIDG 237
            L+ ++  RL++ L     ++RLG DEF ++    ++    E +++++++ +++P  I+ 
Sbjct: 541 CLLQEIAKRLRYHLPREITISRLGGDEFLIICPAVKENIHLEKLSQQLLKIISQPITIEA 600

Query: 238 ESLLLGCSLGIAHARAQSGADP--LMWHAHIAMRQAKGSQGCTFHVFNERINRNARSLAD 295
           E L++  S+G+A      G  P  LM +A  AM  AK + G  F +F   +N  A +   
Sbjct: 601 EELVITASIGVA-CYPNDGVTPEVLMRNADTAMYSAKRNGGNDFQLFMPTMNAEAHARIQ 659

Query: 296 LESELRRALRRDELELHYQPRLNLADGRIVGLEALVRWRHAERGLLPPSEFVPLAEQSGL 355
           LE+ LR AL + +L++ YQP ++L D  +VGLEAL RW   E G +PP  F+P+AE++GL
Sbjct: 660 LETHLRHALEQYQLKVFYQPIISLQDNHVVGLEALARWHDPELGNIPPDRFIPIAEETGL 719

Query: 356 IVPLGYWVISRALRDMQALCERGLEPLHMAVNLSFRQFQDSQLLATLSRLILEHGVDARW 415
           I+PLGY VI +A +D+    ++   P  +AVNLS RQ + ++     ++++  H     +
Sbjct: 720 IIPLGYRVIEQACQDVAIWQQKYNYPFWVAVNLSPRQLRSNRFTQITAKILQRHNFRPNY 779

Query: 416 LEFELTETAVMRRNEVVRQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPITLLKVDRSF 475
           L+ E+TE  ++     + Q +D L R G+  +LDDFGTG+S+  +L   P   LKVD+SF
Sbjct: 780 LKLEVTEQMLLDNTSTIAQMLDTLHRKGIALALDDFGTGYSALSYLRRYPFQSLKVDQSF 839

Query: 476 VAEMEMREENRKLVHAMINLAHNLNLEVVAEGVESEEQLTLLRGFGCDQVQGFLVSRPLP 535
           + ++    E+  LV  ++ +AH L ++ VAEGVE+ EQ+  L+  GC+  QG+  SRPLP
Sbjct: 840 LRDIPHSTESCALVKTIVAMAHGLGMQAVAEGVETAEQVEFLKAIGCEYGQGYWFSRPLP 899

Query: 536 IGELMAYLLQAPGRQ 550
             E+ ++L  + G +
Sbjct: 900 AVEIDSFLAVSTGHE 914