Pairwise Alignments

Query, 555 a.a., GGDEF domain protein from Pseudomonas putida KT2440

Subject, 886 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

 Score =  289 bits (739), Expect = 4e-82
 Identities = 176/437 (40%), Positives = 255/437 (58%), Gaps = 17/437 (3%)

Query: 120 LQRLAEQDPLTGIANRQGF-----QALLNARLAENEGRGVALGHLDLDNFRHVNDALGHQ 174
           ++ L+  D LT + NR  F     QA++ AR       G+A+  +DLD F  VND LGH 
Sbjct: 440 IRYLSNYDTLTRLPNRVLFRDRLYQAVVQARRGHG---GLAVMFIDLDQFSLVNDTLGHA 496

Query: 175 SGDRLILQVVARLKHQLEAGDQLARLGSDEFALLIDTRRDANRAEWIAERIVEALAEPYW 234
           +GD L++ + +R+    E  D +AR+G DEFAL+      A+ A  +A R+++ +  P  
Sbjct: 497 AGDHLLMTIASRINAAAEEADTVARVGGDEFALIQTALTSADSAASLARRLIDVIRTPVD 556

Query: 235 IDGESLLLGCSLGIAHARAQSGADP--LMWHAHIAMRQA--KGSQGCTFHVFNERINRNA 290
           + G  +++G ++GIA    Q G DP  LM +A +AM +A   G   C F  F+  +N  A
Sbjct: 557 LGGREVVIGANVGIA-IYPQDGTDPDNLMKNADMAMYRAVKSGDDSCCF--FSNEMNAEA 613

Query: 291 RSLADLESELRRALRR-DELELHYQPRLNLADGRIVGLEALVRWRHAERGLLPPSEFVPL 349
                LE +LRRAL   D+L LHYQ +  +  GR VG EAL RW H   G +PP+ F+P+
Sbjct: 614 AVRLSLEEDLRRALDSGDQLFLHYQLQFCIESGRPVGAEALARWTHPTLGAIPPTRFIPV 673

Query: 350 AEQSGLIVPLGYWVISRALRDMQALCERGLEPLHMAVNLSFRQFQDSQLLATLSRLILEH 409
           AE SGLI+ LG WV+  AL +       G   L +AVN+S  QF+   L+  ++ L+ +H
Sbjct: 674 AEDSGLILALGDWVLGTALAEYARWRAAGCGRLTIAVNMSAVQFRQKGLVERVTDLLAQH 733

Query: 410 GVDARWLEFELTETAVMRRNEVVRQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPITLL 469
           GV    LE ELTE+ +M+  +     + AL + G+R S+DDFGTG+SS  +L    +  L
Sbjct: 734 GVPPEDLELELTESMLMQDADQAVAQLTALSQAGIRLSIDDFGTGYSSLGYLKLFRVDKL 793

Query: 470 KVDRSFVAEMEMREENRKLVHAMINLAHNLNLEVVAEGVESEEQLTLLRGFGCDQVQGFL 529
           KVD+SFV ++     +  +  A+INL H+L LEV+AEGVE+ EQ+  LR  GCD VQG+L
Sbjct: 794 KVDQSFVRDVTEDGNDAVIARAIINLGHSLGLEVIAEGVETPEQMAYLRREGCDVVQGYL 853

Query: 530 VSRPLPIGELMAYLLQA 546
           ++ P P GE +A  L A
Sbjct: 854 MAYPEP-GETVARRLLA 869