Pairwise Alignments

Query, 555 a.a., GGDEF domain protein from Pseudomonas putida KT2440

Subject, 1422 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  297 bits (760), Expect = 2e-84
 Identities = 165/433 (38%), Positives = 254/433 (58%), Gaps = 3/433 (0%)

Query: 120  LQRLAEQDPLTGIANRQGFQALLNARLAENEGRGVALGHLDLDNFRHVNDALGHQSGDRL 179
            L++L   D LTG+ NR   Q  L   +  N+    AL  LDLDNF+ +ND+LGHQ GD+L
Sbjct: 986  LRKLTNNDLLTGLPNRSNLQVTLGNLV--NKEINHALMVLDLDNFKRINDSLGHQVGDKL 1043

Query: 180  ILQVVARLKHQLEAGDQLARLGSDEFALLIDTRRDANRAEWIAERIVEALAEPYWIDGES 239
            +  V  R+K  +     + RLG DEFA+++D   D   +  IA RIV+A    Y ID E 
Sbjct: 1044 LKLVSVRIKSSVPKNTNIYRLGGDEFAIVLDKTSDILASAAIAGRIVDAFNTVYEIDNEQ 1103

Query: 240  LLLGCSLGIA-HARAQSGADPLMWHAHIAMRQAKGSQGCTFHVFNERINRNARSLADLES 298
            L+LG S+GI  +   +     L+  A IAM  AK + G  +  ++E +N +A    + E+
Sbjct: 1104 LVLGVSVGIVLYPDDEQNEQALLRKADIAMYHAKSAGGNCYQFYSESLNEHAIKQLETEN 1163

Query: 299  ELRRALRRDELELHYQPRLNLADGRIVGLEALVRWRHAERGLLPPSEFVPLAEQSGLIVP 358
             +R  L+ D  E++YQP+++L  G + G+EALVR  H   GL+PP++F+PLAE++GLIV 
Sbjct: 1164 LIREGLKEDLFEVYYQPKVDLKHGHVAGMEALVRLNHPTLGLIPPNDFIPLAEENGLIVE 1223

Query: 359  LGYWVISRALRDMQALCERGLEPLHMAVNLSFRQFQDSQLLATLSRLILEHGVDARWLEF 418
            +G  V+ +A    Q   E+GL    +AVNLS RQF    L   +  ++    + A  LE 
Sbjct: 1224 IGEIVLRKACFAAQKWREQGLFKGRVAVNLSSRQFALPDLQQRIESILRLTQLPASHLEL 1283

Query: 419  ELTETAVMRRNEVVRQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPITLLKVDRSFVAE 478
            E+TE  V+++ E+    M  L ++GV  +LDDFGTG+SS  +L   PI  LK+D++FV +
Sbjct: 1284 EITEGTVIKQPEMAITVMQQLAKMGVSLALDDFGTGYSSLSYLKRFPIHTLKIDKAFVDD 1343

Query: 479  MEMREENRKLVHAMINLAHNLNLEVVAEGVESEEQLTLLRGFGCDQVQGFLVSRPLPIGE 538
            ++  + + K+V ++I +AHN+ L VV EGVE   QL +LR   C+++QG++ S+ +   E
Sbjct: 1344 IDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQAAQLNILRALNCEEIQGYIFSKAINEAE 1403

Query: 539  LMAYLLQAPGRQL 551
                L +   + +
Sbjct: 1404 FTLLLQEDQAKSI 1416