Pairwise Alignments

Query, 555 a.a., GGDEF domain protein from Pseudomonas putida KT2440

Subject, 1077 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  285 bits (729), Expect = 6e-81
 Identities = 157/436 (36%), Positives = 257/436 (58%), Gaps = 9/436 (2%)

Query: 124  AEQDPLTGIANRQGFQALLN--ARLAENEGRGVALGHLDLDNFRHVNDALGHQSGDRLIL 181
            A  D LTG+ NR+ F   L    +LA+++ R +A+  +DLD F+++ND  GH +GD L+ 
Sbjct: 633  AHFDTLTGLPNRKLFNERLQHEIQLAQHDSRKLAILLIDLDQFKYINDVQGHATGDLLLQ 692

Query: 182  QVVARLKHQLEAGDQLARLGSDEFALLIDTRRDANRAEWIAERIVEALAEPYWIDGESLL 241
             V  RL++     D +AR+G DEF L++    +    E +A RI+E L+ P+ ++   + 
Sbjct: 693  DVAKRLENIAGKNDLIARIGGDEFVLILPRVTNEFAIEHMASRIIETLSTPFNLNEREIQ 752

Query: 242  LGCSLGIAHARAQSGAD--PLMWHAHIAMRQAKGSQGCTFHVFNERINRNARSLADLESE 299
            +  S GI     + G D   L  +  +AM QAK +    F  F   +N+   +  +LE  
Sbjct: 753  ISASFGIG-VYPEDGLDVSSLTRNTEMAMYQAKDAGRNNFKYFTSGMNQAMFARMELEQR 811

Query: 300  LRRALRRDELELHYQPRLNLADGRIVGLEALVRWRHAERGLLPPSEFVPLAEQSGLIVPL 359
            LRRA+ +DE  LHYQP + +  G++  +EAL+RW+  + GL+PP +F+ +AE++GLI P+
Sbjct: 812  LRRAVAQDEFTLHYQPIVEMKTGKVCSVEALIRWQDPDLGLIPPDQFIGIAEETGLIEPM 871

Query: 360  GYWVISRALRDMQALCERGLEPLHMAVNLSFRQFQDSQLLA---TLSRLILEHGVDARWL 416
            G WV+++A+ D++   + GL+ L++A+N+S RQ  +++ +     L      H ++ R +
Sbjct: 872  GEWVLNQAMHDLRQWQQLGLQ-LNVAINVSSRQCVNARGMGFDQVLQECFNRHHINPRNV 930

Query: 417  EFELTETAVMRRNEVVRQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPITLLKVDRSFV 476
              E+TE+ +M        T++A+ RLG +  +DDFGTG+SS  +L   PI+++K+DRSFV
Sbjct: 931  HIEITESMLMGDASHCLSTLEAIRRLGSQIYIDDFGTGYSSLSYLKKFPISVIKIDRSFV 990

Query: 477  AEMEMREENRKLVHAMINLAHNLNLEVVAEGVESEEQLTLLRGFGCDQVQGFLVSRPLPI 536
                    N  LV A++ +  +L +E+VAEG+E+E Q  LLR  GC   QG+L+S+PLP 
Sbjct: 991  ENALSNNSNTNLVKAIVMMGQSLEMELVAEGIETEAQWNLLRDLGCHYAQGYLISKPLPF 1050

Query: 537  GELMAYLLQAPGRQLE 552
              +   L Q   R L+
Sbjct: 1051 AAITPLLSQTLPRLLQ 1066