Pairwise Alignments

Query, 462 a.a., Probable multidrug resistance protein NorM from Pseudomonas putida KT2440

Subject, 459 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  209 bits (533), Expect = 1e-58
 Identities = 131/432 (30%), Positives = 216/432 (50%), Gaps = 9/432 (2%)

Query: 8   ELKALLRLAGPLIASQLAHMLMVLTDTLMMARISPQALAGGGLGAASYSFVSIFCLGVIA 67
           + K L++LA P++ +Q+   +M   DT+M  R+S   +A   +G + +    +F  G++ 
Sbjct: 7   QAKRLIQLALPVLIAQVTQTMMGFIDTVMAGRVSAVDMAAVAVGTSLWLPAILFVQGLLM 66

Query: 68  AVGTLVAIRKGANDIEGATRLAQNGLWLAWALALFAALVLWNLEPVLLLFGQKPENVASA 127
           A   L A   GAN+ +    LA  G +LA    L   + L +   VL     +P+     
Sbjct: 67  AFTPLFAHHNGANNQKAIQPLAFQGAYLALIGGLGVMVFLASAPLVLSHMNLEPQLYNLT 126

Query: 128 AEFLTLLPLALPGYLTFMALRGFTSALGRSTPVMVISLFGTVLNYLFNVALIEGMFGLPK 187
             ++  +    P ++ +  LRG +  +  + P MVI   G  +N   N   I G FG+P 
Sbjct: 127 IGYIDGILWGAPAFVLYQVLRGCSEGISYTLPTMVIGFVGLAVNIPANYIFIYGHFGIPA 186

Query: 188 LGLMGIGLVTAVVSMGMATALALYIRWHPAYTAYPLRKGLSRPSLAALRELWRLGLPIGG 247
           +G  G G+ TA+V   M  A+A+Y+++H  + A        RP  A ++++ +LGLPI  
Sbjct: 187 MGGAGCGIATALVFWAMLIAMAIYMQFHKKFAALAPFSQFHRPDFATMKKMTKLGLPIAM 246

Query: 248 TYMVEVGLFAFAALCMGVLGSTELAAHQIALQIVSTAFMVPTGLSYAVTMRVGLYYGAGN 307
               EV LFA  AL +  LG+T +A+HQIAL   +  FM+P  +  AV++R+G Y G   
Sbjct: 247 ALFFEVSLFAIIALLLAPLGATVVASHQIALNFSAIVFMLPLSIGIAVSIRIGYYLGRDR 306

Query: 308 LLAARSAGRVGIGFGAMIMFAFATLFLLLPEALVGLFIDRNDPAFAAIFQVAVQLLMVAA 367
              +    +VG+     +  + A L +L    +  L+   +DP    +  +A  L+++AA
Sbjct: 307 ADISAVVAKVGLLLALSLALSTAILTVLFRFQIAELY--NSDP---EVVVLAGSLMLMAA 361

Query: 368 WFELFDGMQTIAMGSIRGLKDAKTTFLIGLVCYWLVGAPSAWLFTFT----LGGGAVGIW 423
            ++L D +Q +A G++RG KD ++ F I L  YW +G    +   +T       GA G W
Sbjct: 362 LYQLSDSVQVVAAGALRGYKDTRSAFYITLFSYWGIGMSLGYTLAYTDFIVPAMGAHGFW 421

Query: 424 WGLALGLACAAV 435
            GL  GL  AA+
Sbjct: 422 TGLIAGLTSAAL 433