Pairwise Alignments

Query, 462 a.a., Probable multidrug resistance protein NorM from Pseudomonas putida KT2440

Subject, 501 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 84.3 bits (207), Expect = 8e-21
 Identities = 104/447 (23%), Positives = 185/447 (41%), Gaps = 25/447 (5%)

Query: 9   LKALLRLAGPLIASQLAHMLMVLTDTLMMARISPQALAG--GGLGAASYSFVSIFCLGVI 66
           L+ +L ++        A  ++ L D   ++ +    LA   G  G+ S+ F ++  +G+ 
Sbjct: 12  LRHILVMSSTAAVGISALFVVDLLDIFFLSLLGEHELAAAVGYAGSISF-FTTLIGIGLS 70

Query: 67  AAVGTLVAIRKGANDIEGATRLAQNGLWLAWALALFAALVLWNLEPVLL-LFGQKPENVA 125
            A+G LV+   GA D+E A RL  N   +   +++F ++V+    P L+ L G       
Sbjct: 71  IALGALVSRSIGAKDVELAKRLLLNSAVVTTLISVFVSIVVTTFIPELVTLVGASGHTAE 130

Query: 126 SAAEFLTLLPLALPGYLTFMALRGFTSALGRSTPVMVISLFGTVLNYLFNVALIEGMFGL 185
            A  +L +L  +LP     MAL G   ++G +   M+ +L G  +N     A+++ +F  
Sbjct: 131 LAESYLYILVPSLPFICLAMALGGALRSVGDAKLSMMSTLAGGGVN-----AVLDPIF-- 183

Query: 186 PKLGLMGIGLVTAVVSMGMATALALYIRWHPAYTAYPLRKGLSRPSLAA-LRELWRLGLP 244
             + L  +G+  A ++  +A      I        + L    +R    A L+ ++ +  P
Sbjct: 184 --IFLFAMGIEGAALASVLARITVFVIAGRGVMVKHQLLGKFNRSDFKADLKPIFAIAGP 241

Query: 245 IGGTYMVEVGLFAFAALCMGVLGSTELAAHQIALQIVSTAFMVPTGLSYAVTMRVGLYYG 304
              T +      AF    +   G   +A   +  ++V   F +   LS A+   VG  +G
Sbjct: 242 AILTNIATPIGNAFVTRAIADFGDAYVAGWAVLGRLVPVTFGMIFALSGAIGPIVGQNFG 301

Query: 305 AGNLLAARSAGRVGIGFGAMIMFAFATLFLLLPEALVGLFIDRNDPAFAAIFQVAVQLLM 364
           AG     R +    I F  + +   + L  LL   +V LF  + D   AA+ +     + 
Sbjct: 302 AGRFDRVRESLTKAIQFCTLYVVVMSLLLFLLKSQIVSLFDMKGDS--AALIEFFCSYIA 359

Query: 365 VAAWFELFDGMQTIAMGSIRGLKDAKTTFLIGLVCYWLVGAPSAWLFTFTLGGGAVGIWW 424
           V   F +F G+  +A  S   L  AK + L        VG  +     F   G  +G  +
Sbjct: 360 V---FFIFSGILFVANASFNNLGKAKYSTLFN------VGKATLGTVPFVYVGAQLGGVY 410

Query: 425 GLALGLACAAVALTFGFEWRMKRLLGK 451
           G+ +G    ++       W   RL+ K
Sbjct: 411 GVLIGQVIGSILFGVVGVWVAYRLVDK 437