Pairwise Alignments

Query, 296 a.a., Transcriptional regulator, LysR family from Pseudomonas putida KT2440

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella amazonensis SB2B

 Score =  188 bits (478), Expect = 1e-52
 Identities = 116/291 (39%), Positives = 161/291 (55%), Gaps = 4/291 (1%)

Query: 1   MSKRLVPSMTALQCFEAAARHLSFTRAAEELHLTQSAVSKQVAQLEDMLRHHLFLRIRRR 60
           MS+RL P + A++ FEAAARHLSFTRAAEEL +TQ+AVS Q+  LED L   LF R  R 
Sbjct: 1   MSRRL-PPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRS 59

Query: 61  LQLTPAGSLYLAEVNKILTQVDMSSRYVLTYGEQTEILKVATQPSFGVRWLIPHLKGFGK 120
           L LT  G  Y  ++  I TQ+  ++  +L        L V+  PSF ++WL+P L  F +
Sbjct: 60  LLLTEEGQSYFLDIKDIFTQLSDATDRLLA-RSAIGSLTVSMSPSFAIQWLVPRLAKFSE 118

Query: 121 RHGNIHLDIRNEMEPFALLQGSADVVFFYGQGTWPGATCVELFREEVVPVCAPELLAGRK 180
           ++ +I + I+        L    DV  +YGQG+WPG    +L  E ++PVC+P LL G K
Sbjct: 119 KNPDIDVRIKAVDSEEGSLTDDVDVAIYYGQGSWPGLRADKLRNEVLIPVCSPMLLNGHK 178

Query: 181 -LAGAEELAELVLLQSTSRPEAWHEWFLEQDLQSVSAYHGPRFDTFYMALSAAQAGCGVA 239
            L    +L    LL   SR + W  WF +  +  V+   GP F    + L AA  G GVA
Sbjct: 179 PLETPADLKHHTLLHDMSRHD-WQAWFRQCGVTDVNVNQGPIFSHSSLVLQAAAHGQGVA 237

Query: 240 LVPRYLAAKELADGSLVVPWNHAMRSAGAHYLAYAEHAAEVPKVRALVEWI 290
           L    LA  ++  G LVVP+   + S  A+YL   ++ AE+ K+ A  EW+
Sbjct: 238 LGYSVLARPDIKAGRLVVPFQEVLVSKDAYYLVCQQNHAELGKIVAFREWM 288