Pairwise Alignments

Query, 296 a.a., Transcriptional regulator, LysR family from Pseudomonas putida KT2440

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella loihica PV-4

 Score =  184 bits (468), Expect = 2e-51
 Identities = 113/292 (38%), Positives = 162/292 (55%), Gaps = 6/292 (2%)

Query: 1   MSKRLVPSMTALQCFEAAARHLSFTRAAEELHLTQSAVSKQVAQLEDMLRHHLFLRIRRR 60
           MS+RL P + A++ FEAAARHLSFTRAAEEL +TQ+AVS Q+  LE+ L   LF R  R 
Sbjct: 1   MSRRL-PPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEYLGLKLFRRKNRS 59

Query: 61  LQLTPAGSLYLAEVNKILTQV-DMSSRYVLTYGEQTEILKVATQPSFGVRWLIPHLKGFG 119
           L LT  G  Y  ++  I  Q+ D + R  L        L V+T PSF ++WL+P L  F 
Sbjct: 60  LLLTEEGQGYFLDIKDIFVQLADATDR--LLARSAIGSLTVSTSPSFAIQWLVPRLANFS 117

Query: 120 KRHGNIHLDIRNEMEPFALLQGSADVVFFYGQGTWPGATCVELFREEVVPVCAPELLAGR 179
           + + +I + I+   +  + L    DV  +YG G WPG    +L  E ++PVC+P LL+G 
Sbjct: 118 ENNPDIDVRIKAVDDETSSLTDDVDVAIYYGMGNWPGLRADKLRNEVLIPVCSPMLLSGP 177

Query: 180 K-LAGAEELAELVLLQSTSRPEAWHEWFLEQDLQSVSAYHGPRFDTFYMALSAAQAGCGV 238
           K L+   +L    LL  +SR + W  WF +  +  ++   GP F    + L AA  G GV
Sbjct: 178 KPLSQPSDLKHHTLLHDSSRHD-WQAWFRQCGINDINVNQGPIFSHSSLVLQAAAHGQGV 236

Query: 239 ALVPRYLAAKELADGSLVVPWNHAMRSAGAHYLAYAEHAAEVPKVRALVEWI 290
           AL    LA  ++  G LV P+   + S  A+YL   ++ AE+ K+ A  +W+
Sbjct: 237 ALGYSVLARPDIKAGRLVCPFPEVLVSKNAYYLVCQQNHAEIGKIVAFRKWM 288