Pairwise Alignments

Query, 296 a.a., Transcriptional regulator, LysR family from Pseudomonas putida KT2440

Subject, 309 a.a., LysR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  153 bits (387), Expect = 4e-42
 Identities = 95/297 (31%), Positives = 156/297 (52%), Gaps = 8/297 (2%)

Query: 1   MSKRLVPSMTALQCFEAAARHLSFTRAAEELHLTQSAVSKQVAQLEDMLRHHLFLRIRRR 60
           M++ ++P + AL+ FE+AARHLSFTRA  EL +T  A+SKQ+  LE  L   LF R  ++
Sbjct: 3   MNQLILPPLNALRAFESAARHLSFTRAGNELFVTHGAISKQIKTLESYLDVSLFNRQHKQ 62

Query: 61  LQLTPAGSLYLAEVNKILTQVDMSSRYVLTYGEQTEILKVATQPSFGVRWLIPHLKGFGK 120
           L LTP G  YL  ++  L  +  ++  + +     + L +   PS  + WLIP L+ F  
Sbjct: 63  LSLTPEGERYLRHISSALQSISQATEELRSQPGIAQALSINVLPSLTINWLIPRLEEFKA 122

Query: 121 RHGNIHLDIRNEMEPFALLQGSADVVFFYGQGTWPGATCVELFREEVVPVCAPELLAGRK 180
           RH ++++D+          +   DV              ++L  E++  VCAP+L   ++
Sbjct: 123 RHPHLYVDLSIGDFQVDFKRDKYDVAIRSATVRPTHCHVLKLMDEDLCLVCAPQL--AKQ 180

Query: 181 LAGAEELAELVLLQSTSRPEAWHEWFLEQDLQSVSAYHGPRFDTFYMALSAAQAGCGVAL 240
           +   +++    LL+ T+RPE W  W  +  L+ ++       + FYM   AA +G G+AL
Sbjct: 181 IDSLQDINRQTLLKHTTRPELWPLWAEKVGLK-LTTDKMLGMEHFYMLSQAAVSGMGLAL 239

Query: 241 VPRYLAAKELADGSLVVPWNHAMRSAGAHY-----LAYAEHAAEVPKVRALVEWIGE 292
           +PR+   KELA+ SLV+P      S  A+Y     L  ++ +    KV+A ++W+ E
Sbjct: 240 IPRFFIEKELAEDSLVIPLATQFTSPYAYYVLTPNLPPSKQSERPLKVQAFIDWLLE 296