Pairwise Alignments

Query, 296 a.a., Transcriptional regulator, LysR family from Pseudomonas putida KT2440

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella sp. ANA-3

 Score =  186 bits (472), Expect = 6e-52
 Identities = 117/292 (40%), Positives = 161/292 (55%), Gaps = 6/292 (2%)

Query: 1   MSKRLVPSMTALQCFEAAARHLSFTRAAEELHLTQSAVSKQVAQLEDMLRHHLFLRIRRR 60
           MS+RL P + A++ FEAAARHLSFTRAAEEL +TQ+AVS Q+  LED L   LF R  R 
Sbjct: 1   MSRRL-PPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRS 59

Query: 61  LQLTPAGSLYLAEVNKILTQV-DMSSRYVLTYGEQTEILKVATQPSFGVRWLIPHLKGFG 119
           L LT  G  Y  ++  I TQ+ D + R  L        L V+  PSF ++WL+P L  F 
Sbjct: 60  LLLTEEGQSYFLDIKDIFTQLADATDR--LLARSAIGSLTVSMSPSFAIQWLVPRLSKFS 117

Query: 120 KRHGNIHLDIRNEMEPFALLQGSADVVFFYGQGTWPGATCVELFREEVVPVCAPELLAGR 179
           +++ +I + I+      + L    DV  +YG G WPG    +L  E ++PVC+P LL G 
Sbjct: 118 EKNPDIDVRIKAVDTEASSLTDDVDVAIYYGLGNWPGLRADKLRNEVLIPVCSPMLLNGP 177

Query: 180 K-LAGAEELAELVLLQSTSRPEAWHEWFLEQDLQSVSAYHGPRFDTFYMALSAAQAGCGV 238
           K L+  E+L    LL   SR + W  WF +  +  ++   GP F    + L AA  G GV
Sbjct: 178 KPLSKPEDLKYHTLLHDMSRHD-WQAWFRQCGIHDINVNQGPIFSHSSLVLQAAAHGQGV 236

Query: 239 ALVPRYLAAKELADGSLVVPWNHAMRSAGAHYLAYAEHAAEVPKVRALVEWI 290
           AL    LA  ++  G LV P+   + S  A+YL   ++ AE+ KV A  EW+
Sbjct: 237 ALGYSVLARPDIKAGRLVCPFQEVLVSKDAYYLVCQQNHAELGKVVAFREWM 288