Pairwise Alignments

Query, 299 a.a., Tyrosine recombinase XerC from Pseudomonas putida KT2440

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score =  174 bits (440), Expect = 3e-48
 Identities = 104/284 (36%), Positives = 168/284 (59%), Gaps = 10/284 (3%)

Query: 15  ERQVSEHTSQGYRRDLEKVIAYCEEHGIADWQALQIQQLRQLIARLHHHGQSPRSLARLL 74
           ER ++E+T   YR DL K++ +  ++       +    L++  + L      P S AR+L
Sbjct: 22  ERGLAENTVASYRNDLSKLLEWMAQNQYR-LDFISFAGLQEYQSWLSEQNYKPTSKARML 80

Query: 75  SAVRGLYRYLNREGLCQHDPANGLSAPKGERRLPKVLDTDRALQLLDGGVDDDFIARRDQ 134
           SA+R L++YL+RE +   DP+  L +PK   RLPK L   +   LL        +  RD+
Sbjct: 81  SAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSAPDPQSPLELRDK 140

Query: 135 AILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKGGKARVLPVGRKAREALQAWY--- 191
           A+LEL Y++GLR++EL +L ++++ L  G+V+V+GKGGK R++P+G  A E ++ +    
Sbjct: 141 AMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGENAIEWIETFLQQG 200

Query: 192 RLRGIGNPRDRAVFITRQGNRISPRAVRLRVK----VAGERELGQHLHPHMLRHSFASHV 247
           R   +G      VF + +G +++ +    R+K    +AG     + L PH+LRH+FA+H+
Sbjct: 201 RSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDV--EKLSPHVLRHAFATHL 258

Query: 248 LESSQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHPRA 291
           L    DLR VQ +LGH+D+STTQIYTH+  + L  +++  HPRA
Sbjct: 259 LNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302