Pairwise Alignments

Query, 906 a.a., ribosome-associated ATPase from Pseudomonas putida KT2440

Subject, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

 Score =  149 bits (377), Expect = 3e-40
 Identities = 138/494 (27%), Positives = 229/494 (46%), Gaps = 38/494 (7%)

Query: 1   MNAPALLAEGISHRYGDLIALHPLGFSLPVGTRCALIGPDGAGKSTLLGLIAGVKRLQQG 60
           M    L    I   +  + AL     ++  G   AL+G +GAGKSTL+ ++ G+     G
Sbjct: 1   MTQAILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAG 60

Query: 61  ELQVLGGSIRQRRHRTALYPKVAFMPQGLGNNLYPELSISENI---RFFATLFG-LGRRE 116
            ++  G  +  +  R +    ++ + Q L  NL P+L+I+ENI   R   + FG +   E
Sbjct: 61  SIEYQGQPVSFKGPRDSQLAGISIIHQEL--NLIPQLTIAENIFLGREMTSPFGRILWDE 118

Query: 117 CEQRMANLLQATDLQHFAQRPAGKLSGGMKQKLGLCCALIHEPDLLILDEPTTGVDPLSR 176
             ++   LL   +++H A+   G+LS G +Q + +  AL  E  ++I+DEPT  +     
Sbjct: 119 MHRKADQLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTET 178

Query: 177 RRFWELVEQVRAQRPQLTLLVATAYMEEAEQFEHCLMLDGGRLLAAGPSHELAAVTSSGK 236
              + ++ ++R Q   +  +         E FE C   D   +L  G       V  +  
Sbjct: 179 ESLFNVINELREQGCGIVYISHRL----KEIFEIC---DDITVLRDGKFIGECRVCDTN- 230

Query: 237 LDDAFTHYQGAGKAQHQPLAIPPRQATDGPVAIEAHDLTLRFGDFTAVNKVSFAIGRGEI 296
            +D         K + Q    P   A  G +++E   LT      + V+ VSF + +GEI
Sbjct: 231 -EDGLIEMMVGRKLEEQ---YPRIAAQQGDISLEVIGLT-----GSGVHDVSFTLKKGEI 281

Query: 297 FGFLGSNGCGKTTTMKVLTGLMPASEGSASLLGR---PVDASDLATRKRVGFMSQSFSLY 353
            G  G  G G+T  MKV+ G +P+  G  +L GR   PV   D      + ++S+     
Sbjct: 282 LGVSGLMGAGRTELMKVIYGALPSERGVINLNGRTVNPVSPQD-GLANGIAYISEDRKGD 340

Query: 354 G---ELSTRQNLALHARLFDLPKAESAQRIDELIERFDLAAI-------ADQPSGALPLG 403
           G    LS ++N++L A L  L K    +  DE+I   D   +        +Q  G L  G
Sbjct: 341 GLVLGLSVKENMSLCA-LDQLSKGVQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGG 399

Query: 404 LRQRLSLAVAVLHRPEVLILDEPTSGVDPAARDDFWRLLVELSREQGVTIFLSTHFMNEA 463
            +Q++++A  ++ +P+VLILDEPT GVD  A+ + ++L+ +   E    I +S+      
Sbjct: 400 NQQKVAIAKGLMTKPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVL 459

Query: 464 QRCDRISLMHAGRV 477
              DRI +MH GR+
Sbjct: 460 GMSDRILVMHEGRI 473



 Score = 93.2 bits (230), Expect = 4e-23
 Identities = 69/245 (28%), Positives = 117/245 (47%), Gaps = 13/245 (5%)

Query: 278 FGDFTAVNKVSFAIGRGEIFGFLGSNGCGKTTTMKVLTGLMPASEGSASLLGRPVDASDL 337
           F    A++K S  +  G +   +G NG GK+T MKVLTG+     GS    G+PV     
Sbjct: 15  FPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSIEYQGQPVSFKGP 74

Query: 338 ATRKRVGF--MSQSFSLYGELSTRQNLALHARLFD----LPKAESAQRIDELIERFDLAA 391
              +  G   + Q  +L  +L+  +N+ L   +      +   E  ++ D+L+ R ++  
Sbjct: 75  RDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMHRKADQLLARLNVKH 134

Query: 392 IADQPSGALPLGLRQRLSLAVAVLHRPEVLILDEPTSGVDPAARDDFWRLLVELSREQGV 451
            A    G L LG +Q + +A A+    +V+I+DEPT  +     +  + ++ EL REQG 
Sbjct: 135 SAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLFNVINEL-REQGC 193

Query: 452 TIFLSTHFMNEA-QRCDRISLMHAGRVL----ACDT-PDALQHQYQGDTLEDAFVRCLEQ 505
            I   +H + E  + CD I+++  G+ +     CDT  D L     G  LE+ + R   Q
Sbjct: 194 GIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGRKLEEQYPRIAAQ 253

Query: 506 AQELA 510
             +++
Sbjct: 254 QGDIS 258