Pairwise Alignments

Query, 906 a.a., ribosome-associated ATPase from Pseudomonas putida KT2440

Subject, 582 a.a., ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

 Score =  231 bits (589), Expect = 1e-64
 Identities = 134/291 (46%), Positives = 180/291 (61%), Gaps = 11/291 (3%)

Query: 229 AAVTSSGKLDDAFTHYQGAGKAQHQPLAIPPRQATD--GPVAIEAHDLTLRFGDFTAVNK 286
           AAVT   + +DAF    G G      LA   R+ T+  G   IEA  LT RFGDFTA + 
Sbjct: 294 AAVTPP-RFEDAFVDMLGGGPGGRSRLAETQREFTEDAGRPVIEARGLTKRFGDFTAADN 352

Query: 287 VSFAIGRGEIFGFLGSNGCGKTTTMKVLTGLMPASEGSASLLGRPVDASDLATRKRVGFM 346
           ++F I RGEIFG LG NG GK+TT K+L GL+  S G   + G  +  +    R R+G+M
Sbjct: 353 ITFDIPRGEIFGLLGPNGAGKSTTFKMLCGLLKPSAGEGRVAGFDLRRNAPEARNRLGYM 412

Query: 347 SQSFSLYGELSTRQNLALHARLFDLPKAESAQRIDELIERFDLAAIADQPSGALPLGLRQ 406
           +Q FSLYG+LS  QN    A ++ L  A   +RI  + E FD   I D  +  LPLGL+Q
Sbjct: 413 AQKFSLYGDLSVIQNFNFFAGVYGLSGARKRERIGLMSEIFDFRTILDMSAKDLPLGLKQ 472

Query: 407 RLSLAVAVLHRPEVLILDEPTSGVDPAARDDFWRLLVELSREQGVTIFLSTHFMNEAQRC 466
           RL+LA +VLH PEVL LDEPTSGVDP  R +FW  +  L  E+GVT+ ++THFM+EA+ C
Sbjct: 473 RLALACSVLHEPEVLFLDEPTSGVDPITRREFWTHINGLV-EKGVTVLVTTHFMDEAEYC 531

Query: 467 DRISLMHAGRVLACDTPDALQHQYQG-----DTLEDAFVRCLE--QAQELA 510
           DRISL++ GR +A  +PD ++ +  G      T+EDAF+  ++  +A+E A
Sbjct: 532 DRISLIYRGRSIALGSPDDMKARVAGKDLPDPTMEDAFIALIQGSEAKEAA 582



 Score =  174 bits (441), Expect = 1e-47
 Identities = 107/280 (38%), Positives = 159/280 (56%), Gaps = 14/280 (5%)

Query: 3   APALLAEGISHRYGDLI-ALHPLGFSLPVGTRCALIGPDGAGKSTLLGLIAGVKRLQQGE 61
           AP +   G++ R+G    AL  +   +  G    L+GPDGAGK+TL+ L+ G+     G 
Sbjct: 11  APFVRLTGVTKRFGTARPALDAVAGEIFGGRVTGLVGPDGAGKTTLIRLMTGLMLPDAGT 70

Query: 62  LQVLGGSIRQRRHRTALYPKVAFMPQGLGNNLYPELSISENIRFFATLFGLGRRECEQRM 121
           ++VLG   R  R   ++   + +MPQ  G  LY +LS+ EN+  +A L GL + E  +  
Sbjct: 71  IEVLGYDTR--RDPASIQAAIGYMPQRFG--LYEDLSVQENLDLYADLRGLPKTERSRTF 126

Query: 122 ANLLQATDLQHFAQRPAGKLSGGMKQKLGLCCALIHEPDLLILDEPTTGVDPLSRRRFWE 181
             LL  TDL  F  R AGKLSGGMKQKLGL CAL+ +P LL+LDEP  GVDP+SRR  W+
Sbjct: 127 GELLDFTDLARFTTRLAGKLSGGMKQKLGLACALLRKPRLLLLDEPGVGVDPISRRDLWK 186

Query: 182 LVEQVRAQRPQLTLLVATAYMEEAEQFEHCLMLDGGRLLAAGPSHELAAVTSSGKLDDAF 241
           +V  +R +   + ++ +TAY+EEAE  +H  +L+ G L+ +GP  E+     +G+++D  
Sbjct: 187 MVGNLRTE--GIGVVWSTAYLEEAEACDHVFLLNQGSLMFSGPPAEM-----TGRVEDRV 239

Query: 242 THYQGAGKAQHQPLA--IPPRQATDGPVAIEAHDLTLRFG 279
               G    + + LA  +      DG +  EA  L ++ G
Sbjct: 240 FRLSGIRGRRREALARFLEDEGVVDGVIQGEAIRLVMKAG 279



 Score =  146 bits (369), Expect = 3e-39
 Identities = 82/228 (35%), Positives = 133/228 (58%), Gaps = 4/228 (1%)

Query: 259 PRQATDGPVA--IEAHDLTLRFGDFT-AVNKVSFAIGRGEIFGFLGSNGCGKTTTMKVLT 315
           P  AT+   A  +    +T RFG    A++ V+  I  G + G +G +G GKTT ++++T
Sbjct: 2   PAPATEPGTAPFVRLTGVTKRFGTARPALDAVAGEIFGGRVTGLVGPDGAGKTTLIRLMT 61

Query: 316 GLMPASEGSASLLGRPVDASDLATRKRVGFMSQSFSLYGELSTRQNLALHARLFDLPKAE 375
           GLM    G+  +LG        + +  +G+M Q F LY +LS ++NL L+A L  LPK E
Sbjct: 62  GLMLPDAGTIEVLGYDTRRDPASIQAAIGYMPQRFGLYEDLSVQENLDLYADLRGLPKTE 121

Query: 376 SAQRIDELIERFDLAAIADQPSGALPLGLRQRLSLAVAVLHRPEVLILDEPTSGVDPAAR 435
            ++   EL++  DLA    + +G L  G++Q+L LA A+L +P +L+LDEP  GVDP +R
Sbjct: 122 RSRTFGELLDFTDLARFTTRLAGKLSGGMKQKLGLACALLRKPRLLLLDEPGVGVDPISR 181

Query: 436 DDFWRLLVELSREQGVTIFLSTHFMNEAQRCDRISLMHAGRVLACDTP 483
            D W+++  L R +G+ +  ST ++ EA+ CD + L++ G ++    P
Sbjct: 182 RDLWKMVGNL-RTEGIGVVWSTAYLEEAEACDHVFLLNQGSLMFSGPP 228



 Score =  143 bits (360), Expect = 3e-38
 Identities = 80/236 (33%), Positives = 132/236 (55%), Gaps = 6/236 (2%)

Query: 4   PALLAEGISHRYGDLIALHPLGFSLPVGTRCALIGPDGAGKSTLLGLIAGVKRLQQGELQ 63
           P + A G++ R+GD  A   + F +P G    L+GP+GAGKST   ++ G+ +   GE +
Sbjct: 333 PVIEARGLTKRFGDFTAADNITFDIPRGEIFGLLGPNGAGKSTTFKMLCGLLKPSAGEGR 392

Query: 64  VLGGSIRQRRHRTALYPKVAFMPQGLGNNLYPELSISENIRFFATLFGLGRRECEQRMAN 123
           V G  +R  R+      ++ +M Q    +LY +LS+ +N  FFA ++GL      +R+  
Sbjct: 393 VAGFDLR--RNAPEARNRLGYMAQKF--SLYGDLSVIQNFNFFAGVYGLSGARKRERIGL 448

Query: 124 LLQATDLQHFAQRPAGKLSGGMKQKLGLCCALIHEPDLLILDEPTTGVDPLSRRRFWELV 183
           + +  D +      A  L  G+KQ+L L C+++HEP++L LDEPT+GVDP++RR FW  +
Sbjct: 449 MSEIFDFRTILDMSAKDLPLGLKQRLALACSVLHEPEVLFLDEPTSGVDPITRREFWTHI 508

Query: 184 EQVRAQRPQLTLLVATAYMEEAEQFEHCLMLDGGRLLAAGPSHELAAVTSSGKLDD 239
             +      +T+LV T +M+EAE  +   ++  GR +A G   ++ A  +   L D
Sbjct: 509 NGL--VEKGVTVLVTTHFMDEAEYCDRISLIYRGRSIALGSPDDMKARVAGKDLPD 562