Pairwise Alignments

Query, 365 a.a., spermidine/putrescine ABC transporter - periplasmic subunit from Pseudomonas putida KT2440

Subject, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  179 bits (455), Expect = 8e-50
 Identities = 108/335 (32%), Positives = 181/335 (54%), Gaps = 20/335 (5%)

Query: 4   MGKTLLAAALMGA--MASAVQAEDKVLNVYNWSDYIAPDTIAKFEKQTGIKVKYDVFDSN 61
           M   L A+AL  A    +   A+D+ L  YNWS+YI  + +  F K+TGIKV Y  ++SN
Sbjct: 1   MKNKLFASALCAAALFTTNAMAKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYESN 60

Query: 62  ETLEAKLLAGKSGYDIVVPSNNFLAKQIKAGVYEELDRSKLPNWKNLDPDLLKAVGDASD 121
           E++ AKL    +GYD+VVPS  F++K  K G+ +E+D SKL ++K+LDP+ L       D
Sbjct: 61  ESMYAKLKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYL---NKPFD 117

Query: 122 KDNKHAFPYMWGSIGIGYNPEKVKAALGVDKIDSWDVVFKPENIAKLKSCGVSFLDAPTE 181
             NK + PY+WG+ GIG N + +      +  D WD  +  +         +  +D   E
Sbjct: 118 PGNKFSIPYIWGATGIGINTDMLDKKSLKNWGDLWDAKWAGQ---------LMLMDDARE 168

Query: 182 MLPAALHYLGKPTDSTKKEDLKAAEDLFLKIRPSITYFHSSKYIGDMANGNICVAVGYSG 241
           +   AL  LG   ++T  +++KAA     K+ P++  F+S         G + + + ++G
Sbjct: 169 VFHIALSKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNG 228

Query: 242 DLEQSKARAHEAGDKVKVDYVIPKEGAGTFYDMVAIPKDAEHKDAAYEFMNFLMQPEIMA 301
               S   A + G  +++  + P++G   + D ++IP  A++ +AA++ ++FL++PE  A
Sbjct: 229 ----SAYMARQEGAPIQI--IWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAA 282

Query: 302 EITNAVRFPNGNAAATPFVDKDITSDPSIYPPAEV 336
           +I   + +P     A   + K+  +DPSIYPP  V
Sbjct: 283 KIALEIGYPTPVKTAHDLLPKEFANDPSIYPPQSV 317