Pairwise Alignments

Query, 365 a.a., spermidine/putrescine ABC transporter - periplasmic subunit from Pseudomonas putida KT2440

Subject, 369 a.a., extracellular solute-binding protein, family 1 (NCBI) from Rhodospirillum rubrum S1H

 Score =  363 bits (931), Expect = e-105
 Identities = 184/359 (51%), Positives = 261/359 (72%), Gaps = 5/359 (1%)

Query: 9   LAAALMGAMASAVQAEDKVLNVYNWSDYIAPDTIAKFEKQTGIKVKYDVFDSNETLEAKL 68
           +A AL+ A   A  AEDKVLNVYNWSDYIA DT+AKF+ +TGIKV YDV+DSNE LE+KL
Sbjct: 12  VAVALLIA-GPAAAAEDKVLNVYNWSDYIAEDTLAKFQAETGIKVNYDVYDSNELLESKL 70

Query: 69  LAGKSGYDIVVPSNNFLAKQIKAGVYEELDRSKLPNWKNLDPDLLKAVGDASDKDNKHAF 128
           LAG SGYDIVVP+++ L++ I+AG+ ++LD++K+PN  NLDP  L A   A D DN H+ 
Sbjct: 71  LAGSSGYDIVVPTDHTLSRLIQAGIVQKLDKAKIPNLANLDPK-LTARAAAYDADNAHSV 129

Query: 129 PYMWGSIGIGYNPEKVKAALGVD-KIDSWDVVFKPENIAKLKSCGVSFLDAPTEMLPAAL 187
            Y WG+ G+G N +KV+AALG D K+DS+D++FKPE   KL SCG+  LD+  E+   A 
Sbjct: 130 IYEWGTNGLGINIDKVRAALGPDVKLDSFDLLFKPEYAEKLASCGIHVLDSAAEVFSVAR 189

Query: 188 HYLGKPTDSTKKEDLKAAEDLFLKIRPSITYFHSSKYIGDMANGNICVAVGYSGDL--EQ 245
           +YLG   +ST  +DL+ A  L++ +RP I  FHSS++I  +ANG+ICVA GYSGD+   Q
Sbjct: 190 NYLGLEPNSTDPKDLEKATALWMGVRPYIQKFHSSEFINALANGDICVAFGYSGDIFQAQ 249

Query: 246 SKARAHEAGDKVKVDYVIPKEGAGTFYDMVAIPKDAEHKDAAYEFMNFLMQPEIMAEITN 305
           ++ARA EA + VK+DY+IPKEG   ++D++A+P DA H + A++F++F++QP+I A+I+N
Sbjct: 250 AQARAKEAANGVKIDYIIPKEGTLIWFDLMAVPADAPHPENAHKFIDFILQPQISADISN 309

Query: 306 AVRFPNGNAAATPFVDKDITSDPSIYPPAEVKKQLYAIAAPDASVQRVITRSWTKIKSG 364
            V + N N+ AT  +D+ + ++PSIYP  EV  +L+        ++R+ TR+W KIK+G
Sbjct: 310 YVWYANANSKATELLDEAVRTNPSIYPTQEVMDRLFIQKTASPEMERLRTRAWNKIKTG 368