Pairwise Alignments

Query, 365 a.a., spermidine/putrescine ABC transporter - periplasmic subunit from Pseudomonas putida KT2440

Subject, 366 a.a., extracellular solute-binding protein (RefSeq) from Shewanella loihica PV-4

 Score =  391 bits (1005), Expect = e-113
 Identities = 194/359 (54%), Positives = 258/359 (71%), Gaps = 2/359 (0%)

Query: 7   TLLAAALMGAMASAVQAEDKVLNVYNWSDYIAPDTIAKFEKQTGIKVKYDVFDSNETLEA 66
           T LA    G   S+V + ++V+ VYNWSDYIA DT+A FEK+TGIKV YDVFDSNE +EA
Sbjct: 8   TTLALVTAGVFTSSVVSAEEVVRVYNWSDYIAEDTLANFEKETGIKVIYDVFDSNEVVEA 67

Query: 67  KLLAGKSGYDIVVPSNNFLAKQIKAGVYEELDRSKLPNWKNLDPDLLKAVGDASDKDNKH 126
           KLL+G+SGYDIVVPSNNFLAKQIKAG +++LD+S+L N KNL+P+L+K + + +D  N+H
Sbjct: 68  KLLSGRSGYDIVVPSNNFLAKQIKAGAFQKLDQSQLTNHKNLNPELMKQL-ETADPRNEH 126

Query: 127 AFPYMWGSIGIGYNPEKVKAALGVDK-IDSWDVVFKPENIAKLKSCGVSFLDAPTEMLPA 185
           A PY+WG+ GIGYN  KVK  LG D  +DS +++F P+   K+  CG S LD+  EMLP 
Sbjct: 127 AVPYLWGTTGIGYNEAKVKQVLGEDAPVDSLELIFNPKYAEKIAKCGFSLLDSADEMLPM 186

Query: 186 ALHYLGKPTDSTKKEDLKAAEDLFLKIRPSITYFHSSKYIGDMANGNICVAVGYSGDLEQ 245
           A+ YLG   +STK ED   A ++  KIRP +TYFHSS+YI D+ANG+ICVA GYSGD+ Q
Sbjct: 187 AMIYLGLDPNSTKSEDYAKAGEVMAKIRPFVTYFHSSRYITDLANGDICVAFGYSGDVFQ 246

Query: 246 SKARAHEAGDKVKVDYVIPKEGAGTFYDMVAIPKDAEHKDAAYEFMNFLMQPEIMAEITN 305
           + ARA EA +   + Y IPKEG+  ++DM+AIP DA++   A+ F+N+L++PE++A ITN
Sbjct: 247 AAARAEEAENGNVIGYAIPKEGSNLWFDMLAIPADAKNVKNAHTFINYLLRPEVIAPITN 306

Query: 306 AVRFPNGNAAATPFVDKDITSDPSIYPPAEVKKQLYAIAAPDASVQRVITRSWTKIKSG 364
            V + N N  A   VD++I +D +IYP  EV  +LY         QR +TR WTK+KSG
Sbjct: 307 YVAYANPNVPAQELVDEEIRNDAAIYPTPEVLSRLYVADVRPMKAQRAMTRVWTKVKSG 365