Pairwise Alignments

Query, 365 a.a., spermidine/putrescine ABC transporter - periplasmic subunit from Pseudomonas putida KT2440

Subject, 348 a.a., spermidine/putrescine ABC transporter substrate-binding protein PotD from Klebsiella michiganensis M5al

 Score =  196 bits (498), Expect = 8e-55
 Identities = 115/336 (34%), Positives = 188/336 (55%), Gaps = 20/336 (5%)

Query: 1   MNKMGKTLLAAALMGAMASAVQAED-KVLNVYNWSDYIAPDTIAKFEKQTGIKVKYDVFD 59
           M K  + LLAA  +    SA  A+D K L  YNW++Y+ P  + +F K+TGIKV Y  ++
Sbjct: 1   MKKWSRHLLAAGALAVGMSAAHADDSKTLYFYNWTEYVPPGLLEQFTKETGIKVIYSTYE 60

Query: 60  SNETLEAKLLAGKSG-YDIVVPSNNFLAKQIKAGVYEELDRSKLPNWKNLDPDLLKAVGD 118
           SNET+ AKL   K G YD+VVPS  F+ K  K G+ +++D+SKL N+ NLDP++L     
Sbjct: 61  SNETMYAKLKTYKDGAYDLVVPSTYFVDKMRKEGMLQKIDKSKLSNFGNLDPEML---NK 117

Query: 119 ASDKDNKHAFPYMWGSIGIGYNPEKVKAALGVDKIDSWDVVFKPENIAKLKSCGVSFLDA 178
             D +N ++ PY+WG+  IG N +++        + SW  ++KPE  + L        D 
Sbjct: 118 PFDPNNDYSIPYIWGATAIGINSDEIDP----KTVTSWADLWKPEYKSSL-----LLTDD 168

Query: 179 PTEMLPAALHYLGKPTDSTKKEDLKAAEDLFLKIRPSITYFHSSKYIGDMANGNICVAVG 238
             E+   AL  LG   ++T  ++++AA +   K+ P++  F+S         G + + + 
Sbjct: 169 AREVFQVALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMV 228

Query: 239 YSGDLEQSKARAHEAGDKVKVDYVIPKEGAGTFYDMVAIPKDAEHKDAAYEFMNFLMQPE 298
           ++G    S   A +AG  ++V  V PKEG   + D ++IP +A++ D A + +NFL++PE
Sbjct: 229 WNG----SAWVARQAGTPLEV--VWPKEGGIFWMDSLSIPANAKNVDGALKLINFLLRPE 282

Query: 299 IMAEITNAVRFPNGNAAATPFVDKDITSDPSIYPPA 334
           I  ++   + +P  N AA   +  ++ +D S+YP A
Sbjct: 283 IAKQVAETIGYPTPNLAARKMLSPEVANDKSLYPDA 318