Pairwise Alignments

Query, 306 a.a., spermidine/putrescine ABC transporter - inner membrane subunit from Pseudomonas putida KT2440

Subject, 286 a.a., spermidine/putrescine ABC transporter permease PotB from Vibrio cholerae E7946 ATCC 55056

 Score =  195 bits (495), Expect = 1e-54
 Identities = 106/278 (38%), Positives = 161/278 (57%), Gaps = 17/278 (6%)

Query: 20  LVIGVPFIWLFLFFMLPFFIVLKISFAEADVAIPPYTEIYTYVEDKIQLVLNLANYGLLT 79
           L++G    WL LF ++P  +++  SF   D A            + I+      NY  L 
Sbjct: 15  LIVG----WLVLFVLIPNLMIIGTSFLTRDEA------------NLIKFAFTFENYTRLL 58

Query: 80  EDELYLSAYLGSLKMAFFSTLLCLLIGFPMAYAIANAKKETQTVLLLLIMMPTWTAILIR 139
            D LY    L S  MA  +TL+CL+IG+P AY +A   ++ +  +L LI++P WT  LIR
Sbjct: 59  -DPLYGKVMLHSFYMAIVATLICLVIGYPFAYIVAKMPEKWRPFMLFLIIVPFWTNSLIR 117

Query: 140 VYAWMGILSNNGLLNGFLLWTGLIDQPLQILNTNLAVYIGVVYSYLPFMILPLFANLVKH 199
            Y    +L   G+LN  L+  GLID PL+I+ T  AV IG+VY  LPFMILPL++ + K 
Sbjct: 118 TYGLKIVLGTQGILNQALMSLGLIDAPLRIMFTETAVMIGLVYILLPFMILPLYSAIEKL 177

Query: 200 DPSLLEAASDLGSSTFNSFWKITVPLSKNGIIAGCMLVFIPVVGEFVIPELLGGPETLMI 259
           D + +EAA DLG++ F +  ++ +PL+  GII GC+LV +P +G F I +LLGG + L+I
Sbjct: 178 DGTYIEAARDLGANKFQTLVRVILPLTMPGIIGGCLLVLLPALGMFYIADLLGGAKNLLI 237

Query: 260 GKVLWQEFFNNRDWPVASALAVVMLAILIVPILLFNRS 297
           G V+  +  N RDWP  +A ++ +   + + +  + R+
Sbjct: 238 GNVIKSQVLNARDWPFGAATSIALTLAMAIMLYAYYRA 275