Pairwise Alignments

Query, 297 a.a., spermidine/putrescine ABC transporter - permease subunit from Pseudomonas putida KT2440

Subject, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

 Score =  198 bits (503), Expect = 1e-55
 Identities = 101/249 (40%), Positives = 161/249 (64%), Gaps = 12/249 (4%)

Query: 3   RFSFSKLMLVLGLLFIYLPMLILVIYSFNASKLVTVWGGWSIKWYVGLLDNSQLMGSVMR 62
           RFSF  L+     LF+YLP+++L+  SFN +K    WGG++ KWY  L++N  LM +   
Sbjct: 6   RFSFMSLVY----LFLYLPIIVLIANSFNENKFGIKWGGFTTKWYHALMNNDSLMQAAWH 61

Query: 63  SLEIACYTAVAAVALGTLAAFVLTRVTRFKGRTLFGGLVTAPLVMPEVITGLSLLLLFVA 122
           S+ +A ++A AA  +G+L A  L R  +FKG+ +  G++   ++ P+++  +SLL LF+ 
Sbjct: 62  SINVAVFSATAATLIGSLTAVALFRY-QFKGKKVVSGMLFVVMMSPDIVMAISLLALFLV 120

Query: 123 MAQMIGWPQERGIVTIWIAHTTFCAAYVAVVVSARLRELDLSIEEAAMDLGAKPWKVFFL 182
           M   +G+       T+ IAH TFC  +V V V  RL   D+ + EAA DLGA  W +   
Sbjct: 121 MGAKLGF------FTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILKK 174

Query: 183 ITIPMIAPSLAAGGMMSFALSLDDLVLASFVSGPGSTTLPMEVFSAVRLGVKPEINAVAS 242
           I +P+  P++AAG ++SF LSLDD++++SFV+GP    LP++++S V++G+ PE+NA+A+
Sbjct: 175 IILPLAKPAVAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALAT 234

Query: 243 LILLSVSLV 251
            ++L VSLV
Sbjct: 235 -VMLVVSLV 242