Pairwise Alignments

Query, 362 a.a., HlyD family secretion protein from Pseudomonas putida KT2440

Subject, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  110 bits (274), Expect = 8e-29
 Identities = 94/359 (26%), Positives = 160/359 (44%), Gaps = 22/359 (6%)

Query: 1   MALMRPLSVVCLGLLYMLTGCSKE---EVPETLPRVGVQQVQPTDFAARVTLTGDVQARV 57
           MA  R L    +    +L GC +      P  + +  + ++  +  A+ +T  G V+A  
Sbjct: 9   MAAKRSLLSAVIASALLLAGCGEAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQ 68

Query: 58  QTDLSFRVGGKIISRSVDVGDHVKANQVLARLDPKDLQNNVDSAKAEVFAAQARVTQTSA 117
           + DL+FR+ G++   +V  GD VK  Q+LA LD +D +  +++A+ E+   +    +  A
Sbjct: 69  RADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKA 128

Query: 118 AFVRQQKLLPKGYTSQSEYDAAEAALRSNQSALKAAQAQLANANEQLSYTALVSEAAGVI 177
            F + Q +      S++E D       +N+  L  A+ ++  A  +L YT + +   GVI
Sbjct: 129 IFEKTQAI------SKAELDKV-----TNRYDL--AKNRVEEAKRKLEYTQITAPFDGVI 175

Query: 178 TERQAEVGQVVQATMPIFSLAVDGDRDAVFNVYESLLVAPPSDAGVVVSLLDDPKVQAHG 237
           +E+  E    VQA   I  L    D +    +   ++++   +   +  L   P  Q   
Sbjct: 176 SEKTIENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDL 235

Query: 238 FVREITPTVSAQSGTVQVKVGLKD-----VPPGMQLGAPVTATTNAQGRPSIELPWSALT 292
            +R  +   S+ S T  V +G +D     V PGM       A   A     I LP +AL 
Sbjct: 236 KLRTYSTQPSSDSQTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALV 295

Query: 293 KALH-EPAVWVVGEGDKVELRKVEIRRYLTGKIVVASGLKGGETVVVNGGQLLHPGMQV 350
                +  VWVV   ++ E R V+I      ++V+   LK GE V++ G   +  GM V
Sbjct: 296 PDNQGKQFVWVVNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTV 354