Pairwise Alignments

Query, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas putida KT2440

Subject, 359 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score =  106 bits (264), Expect = 1e-27
 Identities = 100/306 (32%), Positives = 139/306 (45%), Gaps = 26/306 (8%)

Query: 4   LLLMLSAAVLLVGCTSEEE-APEVIRPVLSVKVEP-QVQSQLGRFAGSIQARFESTLGFR 61
           L ++  A  LL GC+SE E APE  R  L   + P + +++  RF+G +Q+   + L F 
Sbjct: 14  LTIIACALPLLGGCSSEAEPAPEPPRVALVEPLRPAESKAEALRFSGVVQSVTSTQLSFE 73

Query: 62  VSGRIARRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEGDLAKVQAQWINAQADARRQQQ 121
           VSGRI R  +D G +V+ G TLA LD TD + QLR AE  L ++       +AD  R++ 
Sbjct: 74  VSGRIERILIDEGTRVRRGQTLAQLDRTDYRLQLREAEARLRQL-------EADLARKRT 126

Query: 122 LYDRGVGAQAQLDIAQTNLKTTSAALEQARSAVSQARDQLDYSTLRADHAAVITAWQAEA 181
           L   G+ A A ++  Q N          AR A   A+  +D+STL A    V+    AE 
Sbjct: 127 LLAEGILAPAAIEALQANTVA-------ARVARDSAQRNIDHSTLTAPFDGVVARRLAEP 179

Query: 182 GQTVTAGQAVVTLARPDVKEAVIDLPIGLAEQLSKGLTFTVASQLDPTINTTASLRELEP 241
              V  G  V  +      E  +DLP   A  +  G      ++L    +    LR  E 
Sbjct: 180 DMVVAVGTPVFEMQDNRHIEVSVDLPESAALSIPLGPELQAEAEL-VIADLRLPLRYKEH 238

Query: 242 QADATTRTRRARLTL-ASTPAAFHL--GTAISVTLSSEVSPRSE-----LPLSAL-LERD 292
                   R  RL L    P  F+L  G A+ V L     P ++     LPLSAL    D
Sbjct: 239 STQPREGARTYRLVLQGEPPEDFNLLPGMAMRVRLERPAQPETDNDGFRLPLSALQTGSD 298

Query: 293 GKTQVW 298
           GK  +W
Sbjct: 299 GKHFIW 304