Pairwise Alignments

Query, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas putida KT2440

Subject, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  105 bits (262), Expect = 2e-27
 Identities = 102/366 (27%), Positives = 174/366 (47%), Gaps = 42/366 (11%)

Query: 2   KRLLL--MLSAAVLLVGCTSEEEAPE------VIRPVLSVKVEPQVQSQLGRFAGSIQAR 53
           KR LL  ++++A+LL GC    EAP+      V++P L+  V  Q  S L  F G ++A 
Sbjct: 12  KRSLLSAVIASALLLAGCG---EAPQISAPAPVVKPALTEIVASQRASDL-TFNGVVRAA 67

Query: 54  FESTLGFRVSGRIARRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEGDLAKVQAQWINAQ 113
             + L FR+SGR+    +  G QVK G  LA+LD  D +  L AA+ +L   + ++  A+
Sbjct: 68  QRADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAK 127

Query: 114 ADARRQQQLYDRGVGAQAQLDIAQTNLKTTSAALEQARSAVSQARDQLDYSTLRADHAAV 173
           A   + Q +      ++A+LD      K T+   + A++ V +A+ +L+Y+ + A    V
Sbjct: 128 AIFEKTQAI------SKAELD------KVTN-RYDLAKNRVEEAKRKLEYTQITAPFDGV 174

Query: 174 ITAWQAEAGQTVTAGQAVVTLARPDVKEAVIDLPIGLAEQLSKGLTFTVASQLDPTINTT 233
           I+    E    V A Q ++ L   +  E  I++P  +     +           P     
Sbjct: 175 ISEKTIENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFD 234

Query: 234 ASLRELEPQADATTRTRRARLTLASTPAAFHLGTAISVTLSSEVSPRSE----------L 283
             LR    Q  + ++T    L           G  +   +S++V P ++          L
Sbjct: 235 LKLRTYSTQPSSDSQTYSVVLGFEDLK-----GFRVMPGMSAKVIPVADKPADENTLITL 289

Query: 284 PLSALL-ERDGKTQVWVIDTQNKTVATRDVALIDRTADSIVLSAGVQPGERVVTAGVNSL 342
           PL+AL+ +  GK  VWV++ QN+    R V +     D +V++  ++PGE+V+ AGV+S+
Sbjct: 290 PLTALVPDNQGKQFVWVVNAQNQ-AEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSV 348

Query: 343 KPGQKV 348
           + G  V
Sbjct: 349 REGMTV 354