Pairwise Alignments

Query, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas putida KT2440

Subject, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score = 87.0 bits (214), Expect = 6e-22
 Identities = 93/357 (26%), Positives = 150/357 (42%), Gaps = 35/357 (9%)

Query: 2   KRLLLMLSAAVLLVGCTSE-EEAPEV-IRPVLSVKVEPQVQSQLGRFAGSIQARFESTLG 59
           K LL     + LLVGC  E    PE   RP     V     +   +F  +  A   + L 
Sbjct: 3   KTLLAFSICSTLLVGCGKELPPVPEPDSRPAKLTTVSVGNNTFSRQFPATTAAGDRAVLA 62

Query: 60  FRVSGRIARRWLDVGAQVKPGDTLATLDPTDQQ--NQLRAAEGDLAKVQAQWINAQADAR 117
           FRV G++    +  G +VK G+ LA L+P +     Q  +A   LA VQ Q         
Sbjct: 63  FRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQ--------- 113

Query: 118 RQQQLYDRGVGAQAQLDIAQTNLKTTSAALEQARSAVSQARDQLDYSTLRADHAAVITAW 177
           R Q+L    V ++   D AQ N  +  A  EQA++        L Y+ L A +   I+  
Sbjct: 114 RAQRLRQDKVVSEQDFDQAQANHNSAKATWEQAKA-------NLRYTQLIAPYDGTISLI 166

Query: 178 QAEAGQTVTAGQAVVTLARPDVKEAVIDLPIGLAEQLSK-GLTFTVASQLDPTINTTASL 236
            AE  + V A Q V+ +    + +    LP  L  + S+ G+   +     P        
Sbjct: 167 PAEQYEYVAAKQGVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQF 226

Query: 237 RELEPQADATTRTRRARLTL-ASTPAAFHLGTAISVTLSSEVSPRSELPLSALLERDGKT 295
           +E++ +AD+ TR+ +  + +          G A  V+L +     + +P SAL    G  
Sbjct: 227 QEIDTEADSKTRSYKVTMVMERPNDVGILPGMAGRVSLMAPSGSATVIPTSALFAEQGGK 286

Query: 296 QVWVIDTQNKTVATRDVALIDRTADSI----VLSAGVQPGERVVTAGVNSLKPGQKV 348
            VW +D         D  L+ + A ++     +  G+  G+R++ +GV+ +  G KV
Sbjct: 287 YVWRVD---------DAGLVSKAAVTLNEQRQVLTGLNDGDRIIISGVSGVTEGIKV 334