Pairwise Alignments

Query, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas putida KT2440

Subject, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  111 bits (278), Expect = 3e-29
 Identities = 104/371 (28%), Positives = 174/371 (46%), Gaps = 40/371 (10%)

Query: 3   RLLLMLSAAVLLVGCTSEEEAPEVIRPVLSVKVEPQVQSQLGRFAGSIQARFESTLGFRV 62
           R    L+  +L+ GC+   +      P + V    +  S    F     A   S L FRV
Sbjct: 15  RYTAWLAHLLLIAGCSEPTKLERDTLPRVKVAQAGEKVSDKLFFPAVANAAERSHLSFRV 74

Query: 63  SGRIARRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEGDLAKVQAQWINAQADARRQQQL 122
           +G I++  +  GA+VK GD LA ++PTD +  +  A+   + + +Q+       RR Q L
Sbjct: 75  AGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQY-------RRSQPL 127

Query: 123 YDRGVGAQAQLDIAQTNLKTTSAALEQARSAVSQARDQLDYSTLRADHAAVITAWQAEAG 182
            ++G+ A++Q D         +A  + AR+ +  A+ +L ++ LRA    +I+   AE  
Sbjct: 128 VEKGLLAKSQFD-------EIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQF 180

Query: 183 QTVTAGQAVVTLARPDVKEAVIDLPIGL------AEQLSKGLTF--TVASQLDPTINTTA 234
           ++V  GQ +V +   D  E +I LP  L      A +L+K  T     + Q+ P     A
Sbjct: 181 ESVQVGQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYP-----A 235

Query: 235 SLRELEPQADATTRTRRARLTLASTPAAFHL-GTAISVTLSSE---VSPRS--ELPLSAL 288
            ++E   + D  T T    L+L        L G A+ V+   +   ++P +   +P+ A+
Sbjct: 236 RIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAI 295

Query: 289 LERDG----KT--QVWVIDTQNKTVATRDVALIDRTADSIVLSAGVQPGERVVTAGVNSL 342
              DG    KT   VW+++  N TV+ R V L   +   + +S G+  G+R+V AGV  L
Sbjct: 296 FNADGDELDKTAQYVWLLNNDN-TVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARL 354

Query: 343 KPGQKVTFDED 353
           + G KV   E+
Sbjct: 355 RDGMKVQVLEE 365