Pairwise Alignments

Query, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas putida KT2440

Subject, 384 a.a., efflux protein from Sinorhizobium meliloti 1021

 Score =  176 bits (445), Expect = 1e-48
 Identities = 113/354 (31%), Positives = 179/354 (50%), Gaps = 1/354 (0%)

Query: 3   RLLLMLSAAVLLVGCTSEE-EAPEVIRPVLSVKVEPQVQSQLGRFAGSIQARFESTLGFR 61
           RLL  +    +L GC+ E+ E  E IRPV  V++    + +   ++GS++AR E  LGFR
Sbjct: 14  RLLTAILLGAVLSGCSQEKVETKETIRPVKVVEIAAAGEPRELHYSGSVRARTEMNLGFR 73

Query: 62  VSGRIARRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEGDLAKVQAQWINAQADARRQQQ 121
           V G+I  R +++G +VKPGD LA +D TD +  + +AE +L   + Q         R +Q
Sbjct: 74  VGGKITERLVNIGDRVKPGDILARIDATDYRLAVTSAEANLLAAEKQVQTTALAKLRAEQ 133

Query: 122 LYDRGVGAQAQLDIAQTNLKTTSAALEQARSAVSQARDQLDYSTLRADHAAVITAWQAEA 181
           L+ +   +QAQLD A        +  + A S++SQA++Q+ Y+ L+AD   ++TA  A+ 
Sbjct: 134 LFTKSFSSQAQLDQATLLYDQAVSTRDAAASSLSQAKNQVSYTDLKADQNGIVTAVNADI 193

Query: 182 GQTVTAGQAVVTLARPDVKEAVIDLPIGLAEQLSKGLTFTVASQLDPTINTTASLRELEP 241
           GQ V  G  VVT+A    KE  I +P     +   G    V    +  +     +RE+  
Sbjct: 194 GQVVGTGTPVVTVAVDGEKEVEIAVPEIDVTEFKPGKPVGVRFWSNDMLVLDGHVREVSG 253

Query: 242 QADATTRTRRARLTLASTPAAFHLGTAISVTLSSEVSPRSELPLSALLERDGKTQVWVID 301
            AD  +RT   R++L +        TA     ++  +P   +PLSAL ++DG+  VW++D
Sbjct: 254 SADQRSRTFSVRVSLPNDERVLLGMTATVEAAAASSAPLVSIPLSALSKKDGQNIVWIVD 313

Query: 302 TQNKTVATRDVALIDRTADSIVLSAGVQPGERVVTAGVNSLKPGQKVTFDEDAQ 355
               TV  R + L D   + + +  G+  G+ VV AG   +    KV      Q
Sbjct: 314 RDFSTVHARPIKLADFADNGVRVVDGLGAGDLVVAAGTQFMAEDLKVRLQAGEQ 367