Pairwise Alignments

Query, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas putida KT2440

Subject, 384 a.a., RND family efflux transporter, MFP subunit from Dechlorosoma suillum PS

 Score =  188 bits (478), Expect = 2e-52
 Identities = 114/343 (33%), Positives = 180/343 (52%), Gaps = 2/343 (0%)

Query: 6   LMLSAAVLLVGCTSEEEAPEVIRPVLSVKVEPQVQSQLGRFAGSIQARFESTLGFRVSGR 65
           L+ + A++L  C  E       RP L+  V    QS +  + G ++AR+E+  GFR+ G+
Sbjct: 9   LLAATAMVLASCGKEAPKAPEPRPALTQVVGAAGQSDM-LWVGEVRARYETDQGFRIGGK 67

Query: 66  IARRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEGDLAKVQAQWINAQADARRQQQLYDR 125
           +  R +D+GA VK G  LA LDP D      AA       +A ++ A+A+  RQ++L ++
Sbjct: 68  VVERKVDIGAVVKKGQILARLDPVDAGLSAAAANAQTKAAEADFLVAKAEYERQKKLLEK 127

Query: 126 GVGAQAQLDIAQTNLKTTSAALEQARSAVSQARDQLDYSTLRADHAAVITAWQAEAGQTV 185
              +Q+  D  +   K   A L+QAR+  +   +Q  Y+ L A+   V+T  + E GQ V
Sbjct: 128 QFISQSAFDSREAQFKAALARLDQARAQAAVTGNQAGYTDLVAEKDGVVTDVKVEPGQVV 187

Query: 186 TAGQAVVTLARPDVKEAVIDLPIGLAEQLSKGLTFTVASQLDPTINTTASLRELEPQADA 245
           +AGQ  + LA    KE V+ +P G  + +  G +  +    +   +  A +RE+ P ADA
Sbjct: 188 SAGQPAIRLALAGDKEVVVAVPEGRMKGIEPGTSAVIRLWANQDQSYAARVREVAPAADA 247

Query: 246 TTRTRRARLTLASTPAAFHLGTAISVTLSSEVSPRSELPLSALLERDGKTQVWVIDTQNK 305
            TR+ + ++T+    A   LG    V + S  +P   +P +AL  +DGK  VWV++ Q+ 
Sbjct: 248 ATRSFQVKVTVLEPDAGLRLGMTAGVLIGSAEAPLL-VPTAALTRQDGKNTVWVVNPQSG 306

Query: 306 TVATRDVALIDRTADSIVLSAGVQPGERVVTAGVNSLKPGQKV 348
            V  R V       D +V+  G+  GERVV AGV+ L+PGQ V
Sbjct: 307 EVQPRSVTTGPFREDGVVVEKGLARGERVVIAGVHKLQPGQLV 349