Pairwise Alignments

Query, 1017 a.a., RND efflux transporter from Pseudomonas putida KT2440

Subject, 1030 a.a., multidrug transporter from Azospirillum brasilense Sp245

 Score =  722 bits (1864), Expect = 0.0
 Identities = 394/1010 (39%), Positives = 609/1010 (60%), Gaps = 4/1010 (0%)

Query: 6    NLSDWALKHQSFVWYLMFVSLLMGIFSYFNLGREEDPSFTIKTMVIQTRWPGATQDETLY 65
            NLS  A++ ++   + + +    G F++  LGR EDPSFTIKT+ + + WPGAT  E   
Sbjct: 4    NLSAIAVRERAVTLFFILLLAAGGAFAFVMLGRAEDPSFTIKTLTVTSVWPGATAREMQD 63

Query: 66   QVTDRIEKKLEELDSLDYTKSYTRPGESTVYVYLRDTTKAKDIPDIWYQVRKKIQDIRGE 125
             V + +EK+L+EL   D  ++ TRPG + + + L+D+T    + + +YQ RKK+ D    
Sbjct: 64   LVAEPLEKRLQELSWYDRVETTTRPGYAYMTLTLKDSTPPAKVQEEFYQARKKMGDETRN 123

Query: 126  FPAGIQGPGFNDEFGDVFGSIYAFTADGLTLRQLRDYVEQARAEVRDVPNIGKIELVGTQ 185
             P G+ GP  NDE+ DV  ++YA  A GL +R+L    E  R  +  VP + K+ ++G +
Sbjct: 124  LPPGVLGPFVNDEYSDVSFALYALKAKGLPMRELARQAETIRQNLLHVPGVKKVNILGER 183

Query: 186  DEVLYLNFSTRKLAALGIDQRQVMQALQAQNAVTPAGMIEAGPERISVRTSGQFASEKDL 245
             E +++ FS  KLA LG+  + ++ ALQ QN VTP+G I+    ++ +R  G +   + +
Sbjct: 184  PERIFVEFSYAKLATLGVSAQDIIAALQRQNTVTPSGSIDTQGPQVFIRIDGAYDGVQAI 243

Query: 246  QTVNLRINDRFFRLADIADIERGYVDPPSPMFRYNGQTAIGLAIGMKAGGNIQVFGAALK 305
                +    R  +L+DIA++ RGY DPP+ + R+ G+  + LA  M+ G +    G AL+
Sbjct: 244  ADTPIVAAGRTLKLSDIAEVRRGYEDPPTYIIRHQGEPTVMLATVMQEGWDGLALGKALE 303

Query: 306  KRMDQVVQDLPVGVGVHTVSDQAVVVKQAVGGFTSALFEAVVIVLAVSFVSLGVRAGLVV 365
            +R   + + LP+G+ +  V+DQAV +  AV  F      A+ +VL VS +SLG R G+VV
Sbjct: 304  ERAAGIARSLPLGMTLDKVTDQAVNITSAVDEFMIKFAMALGVVLLVSLLSLGWRVGIVV 363

Query: 366  ACSIPLVLAMVFVFMEYSGITMQRISLGALIIALGLLVDDAMITVEVMVTRLEMGESKEQ 425
            A ++PL LA+VF+ M  +G    RI+LGALI++LGLLVDDA+I +EVMV ++E G  + +
Sbjct: 364  AAAVPLTLAVVFLIMLETGRFFDRITLGALILSLGLLVDDAIIAIEVMVVKMEEGVDRIR 423

Query: 426  AATFAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVALIVSWVVAVFFA 485
            AA +A++ TA PML+GTLVT+AGF+P+G   S+AGEY   +F V+  +LIVSW+VAV F 
Sbjct: 424  AAAYAWSHTAAPMLSGTLVTIAGFLPVGFARSTAGEYAGNIFWVVGFSLIVSWIVAVVFT 483

Query: 486  PVLGVHILKGDKLKA--HEAEPGRVG-RAFEGGLLWCMRNRWLTIIGTVVLFALAIFCMR 542
            P LG+ +L   K  A  HEA  G    +     + + +R++ LT     + FA+AI  M 
Sbjct: 484  PYLGIKMLPAIKPVAGGHEAIYGTPNYQRLRRVISFAVRHKVLTCGVVGIAFAVAIVGMG 543

Query: 543  FVQNQFFPSSDRPEILVDLNLPQNASIEETRKVVDRFEARIKDDPDLVHWSTYIGQGAIR 602
             V+ QFFP+SDRPE+LV++ LP+  SIE T   V++ E  + + P+    ++Y+GQGA R
Sbjct: 544  GVKQQFFPTSDRPEVLVEVRLPEGTSIETTTASVEKIEHWLAEQPEAKIVTSYVGQGAPR 603

Query: 603  FYLPLDQQLQNPYYAQLVIVSKGFEERQAMMDRLQKILHEEFVGVG-TNVQSLEMGPPVG 661
            F++ L  +L +P +A++V+++   E R+A+  RL++ + +  V      V  L  GP   
Sbjct: 604  FFIALSPELPDPAFAKIVVLTPDAETREALKHRLRQTVAQGLVPEAYVRVTQLVFGPYTP 663

Query: 662  RPIQYRVSGADIDQVRKHAIELATLLDQNEHIGEMIYDWNEPGKVLRVEIAQDKARQLGL 721
             P+++RV G D  Q+   + +   ++     + +   DW     VLR    QD+   +GL
Sbjct: 664  FPVEFRVMGPDPAQLYAISEKALAIMRSVPDVRQANRDWGNRTPVLRFTPDQDRLNLIGL 723

Query: 722  SSEDVANVMNSIVSGVQITQVNDNIYLVDVVARAEDSERGSPDTLQNLQILTPNGTSIPL 781
            S  +V   +  +++G+ +TQV ++I  V +VAR+   ER  P  L +  + +  G  IPL
Sbjct: 724  SPAEVGQQLQFLLTGIAVTQVREDIRNVPIVARSAGGERLDPARLTDFSLTSRTGQQIPL 783

Query: 782  LSFATVRYELEQPLVWRRDRKPTITIKASVNGEIQPTDLVAQLKPKIDEFASKLPVGFEV 841
                     LE+P++ RRDR   ITI++  N   QP ++  Q+   ++   + LPVG+ +
Sbjct: 784  DQIGHADIRLEEPMMKRRDRTSVITIRSDYNEATQPPEVSKQIMTALEPLIASLPVGYRI 843

Query: 842  ATGGTVEESAKAQGPIRKVIPLMLFLMATFLMIQLHSVQKLFLVVSVAPLGLIGVVLALV 901
              GG++EES KA   + KV P+M+  M  F+M+Q+ S   + +V+  APLG++GVV  L+
Sbjct: 844  EAGGSIEESVKANTALGKVFPVMIAAMLVFIMLQVRSFSMMAMVLLTAPLGVVGVVPMLL 903

Query: 902  PTGTPMGFVAILGILALAGIIIRNSVILVTQIDEFEAQGLSPWDAVVEATNHRRRPILLT 961
                P GF AILG++ LAGI++RN++IL  QI E +A GL  + AV+EAT  R RP++LT
Sbjct: 904  AFNQPFGFNAILGLIGLAGILMRNTLILTEQIKENQAAGLDDYHAVIEATVQRTRPVILT 963

Query: 962  AAAASLGMIPIAREVFWGPMAYAMIGGIIVATLLTLLFLPALYVAWYKIR 1011
            A AA L  IP+   VFWG MAY +IGG  V T+L LLFLPALY AW++I+
Sbjct: 964  ALAAVLAFIPLTHSVFWGSMAYTLIGGTAVGTVLILLFLPALYAAWFRIK 1013