Pairwise Alignments

Query, 1017 a.a., RND efflux transporter from Pseudomonas putida KT2440

Subject, 1036 a.a., Cation/multidrug efflux protein from Sinorhizobium meliloti 1021

 Score =  724 bits (1869), Expect = 0.0
 Identities = 395/1012 (39%), Positives = 610/1012 (60%), Gaps = 4/1012 (0%)

Query: 4    SFNLSDWALKHQSFVWYLMFVSLLMGIFSYFNLGREEDPSFTIKTMVIQTRWPGATQDET 63
            SFNLS  A++ ++   + + +    G++++ +LGR EDPSFTIKT+ + T WPGAT  E 
Sbjct: 2    SFNLSALAVRERAVTLFFIVLLAAAGVYAFMSLGRAEDPSFTIKTLTVTTVWPGATAREM 61

Query: 64   LYQVTDRIEKKLEELDSLDYTKSYTRPGESTVYVYLRDTTKAKDIPDIWYQVRKKIQDIR 123
               V + +EK+++EL   D  ++ TRPG + + V L+D+T    + + +YQ RKK+ D  
Sbjct: 62   QDLVAEPLEKRIQELTWYDRVETTTRPGYAFLTVTLKDSTPPTAVEEEFYQARKKLGDEA 121

Query: 124  GEFPAGIQGPGFNDEFGDVFGSIYAFTADGLTLRQLRDYVEQARAEVRDVPNIGKIELVG 183
               P+G+ GP  NDE+ DV  ++YA  A G+ +R+L    E  R ++  VP + KI ++G
Sbjct: 122  RNLPSGVFGPFVNDEYSDVSFALYALKAKGMPMRELVRQAEVIRQDLLHVPGVKKINILG 181

Query: 184  TQDEVLYLNFSTRKLAALGIDQRQVMQALQAQNAVTPAGMIEAGPERISVRTSGQFASEK 243
             + E +++ FS  KLA LGI  + +  ALQ QN VTPAG I+    ++ +R  G + S +
Sbjct: 182  ERPEQIFVEFSYAKLATLGISAQDIAAALQRQNTVTPAGSIDTRGPQVFIRFDGAYNSVQ 241

Query: 244  DLQTVNLRINDRFFRLADIADIERGYVDPPSPMFRYNGQTAIGLAIGMKAGGNIQVFGAA 303
             +    +    R  +L+D A++ RGY DP + + R+ G+ AI L   M+ G N    G A
Sbjct: 242  AIAATPIVAAGRTLKLSDFAEVRRGYEDPATYIIRHEGEPAIMLGAVMQQGWNGLELGKA 301

Query: 304  LKKRMDQVVQDLPVGVGVHTVSDQAVVVKQAVGGFTSALFEAVVIVLAVSFVSLGVRAGL 363
            L++R   + + LP+G+ +  VSDQAV +  AVG F      A+ +VL VS +SLG R G+
Sbjct: 302  LEERSAAIARTLPLGMTLAKVSDQAVNIDAAVGEFMLKFAMALGVVLLVSLLSLGWRVGI 361

Query: 364  VVACSIPLVLAMVFVFMEYSGITMQRISLGALIIALGLLVDDAMITVEVMVTRLEMGESK 423
            VVA ++PL LA+VF+ M  +G    RI+LGALI+ALGLLVDDA+I +EVMV ++E G  +
Sbjct: 362  VVALAVPLTLAVVFLIMLETGRFFDRITLGALILALGLLVDDAIIAIEVMVVKMEEGMDR 421

Query: 424  EQAATFAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVALIVSWVVAVF 483
             +AA +A++ TA PML+GTLVT+ G +P+G   S+AGEY   +F V+  ALIVSWVVAV 
Sbjct: 422  IKAAAYAWSHTAAPMLSGTLVTIIGLMPVGFARSTAGEYAGNIFWVVGFALIVSWVVAVI 481

Query: 484  FAPVLGVHILKGDKLKA---HEAEPGRVGRAFEGGLLWCMRNRWLTIIGTVVLFALAIFC 540
            F P LGV +L   K      H        R   G + + +R++++T     ++ AL++  
Sbjct: 482  FTPYLGVKMLPDIKPVEGGHHAIYDTPNYRRLRGIIEFAVRHKYVTCAVVGIVMALSVVG 541

Query: 541  MRFVQNQFFPSSDRPEILVDLNLPQNASIEETRKVVDRFEARIKDDPDLVHWSTYIGQGA 600
            M  V++QFFP+SDRPE+LV++ +P+ ASIE T   V++ E  +++ P+    ++YIGQGA
Sbjct: 542  MGGVKHQFFPTSDRPEVLVEVRMPEGASIETTIATVEKLERWLQEQPEADILTSYIGQGA 601

Query: 601  IRFYLPLDQQLQNPYYAQLVIVSKGFEERQAMMDRLQKILHEEFVGVG-TNVQSLEMGPP 659
             RF+  +  +L +P +A++V+++     R+A+  RL+  + +  V  G   V  L  GP 
Sbjct: 602  PRFFFAMAPELPDPAFAKIVVLTPDSHAREALKLRLRAAVSDGLVPEGYVRVTQLVFGPY 661

Query: 660  VGRPIQYRVSGADIDQVRKHAIELATLLDQNEHIGEMIYDWNEPGKVLRVEIAQDKARQL 719
               P+++R+ G D  Q+ + + +   ++     + +   DW     VLR    QD+   +
Sbjct: 662  TPFPVEFRIMGPDPAQLYQISEKALEIMKGVPDVRQANRDWGNRTPVLRFVPDQDRLNLI 721

Query: 720  GLSSEDVANVMNSIVSGVQITQVNDNIYLVDVVARAEDSERGSPDTLQNLQILTPNGTSI 779
            GLS  + A  M  ++SG+ +TQV +NI  V VVAR+    R  P  L +  +++ +G  +
Sbjct: 722  GLSPAEAAQQMQLLLSGIPVTQVRENIRNVPVVARSAGESRLDPARLADFSLMSRDGRQV 781

Query: 780  PLLSFATVRYELEQPLVWRRDRKPTITIKASVNGEIQPTDLVAQLKPKIDEFASKLPVGF 839
            PL          E+P++ RRDR P ITI++ +N   QP ++  Q+   +    + LPVG+
Sbjct: 782  PLDQIGHSEIRFEEPILKRRDRTPVITIRSDINEATQPPEVSQQIMTALQPLIASLPVGY 841

Query: 840  EVATGGTVEESAKAQGPIRKVIPLMLFLMATFLMIQLHSVQKLFLVVSVAPLGLIGVVLA 899
             +  GG +EES KA   + K+ P M+  M   +++Q+ S+  + +V+  APLGL GVV  
Sbjct: 842  RIEMGGNIEESLKANVALVKIFPAMIAAMLIVIILQVRSLSTMTMVMLTAPLGLAGVVPV 901

Query: 900  LVPTGTPMGFVAILGILALAGIIIRNSVILVTQIDEFEAQGLSPWDAVVEATNHRRRPIL 959
            L+    P GF AILG++ LAGI++RN++IL  QI E +A GL  + AV+EAT  R RP++
Sbjct: 902  LLLFNQPFGFNAILGLIGLAGILMRNTLILTEQIKENKAAGLHDYHAVIEATVQRTRPVI 961

Query: 960  LTAAAASLGMIPIAREVFWGPMAYAMIGGIIVATLLTLLFLPALYVAWYKIR 1011
            LTA AA L  +P+   VFWG MAY +IGG  V T++ LLFLPALY AW++I+
Sbjct: 962  LTALAAVLAFVPLTHSVFWGSMAYTLIGGTAVGTVMILLFLPALYAAWFRIK 1013