Pairwise Alignments

Query, 1017 a.a., RND efflux transporter from Pseudomonas putida KT2440

Subject, 1014 a.a., efflux RND transporter permease subunit from Pantoea sp. MT58

 Score =  913 bits (2360), Expect = 0.0
 Identities = 474/998 (47%), Positives = 657/998 (65%), Gaps = 1/998 (0%)

Query: 5    FNLSDWALKHQSFVWYLMFVSLLMGIFSYFNLGREEDPSFTIKTMVIQTRWPGATQDETL 64
            FNLS WAL HQ  V + M + +  G+ SY  L R EDP+FTIKT VI  +WPGA  D  +
Sbjct: 7    FNLSGWALAHQQLVIFFMLLVMAAGVLSYERLSRNEDPAFTIKTAVISAQWPGADVDNMV 66

Query: 65   YQVTDRIEKKLEELDSLDYTKSYTRPGESTVYVYLRDTTKAKDIPDIWYQVRKKIQDIRG 124
              VTD +E+K++E+ SLD  +S TR G++ +YV LRD T    +   WYQ+RKK++D+  
Sbjct: 67   QLVTDVLEQKVQEIPSLDAVESETRAGQTVIYVNLRDDTPPSQVAGTWYQLRKKMKDVAA 126

Query: 125  EFPAGIQGPGFNDEFGDVFGSIYAFTADGLTLRQLRDYVEQARAEVRDVPNIGKIELVGT 184
              P G+QGP  NDEF D FG+IY FTADG T R+LRD V+  R  +  +P+IGK  L+G 
Sbjct: 127  SLPQGVQGPAVNDEFDDTFGTIYGFTADGFTARELRDRVDNLRRSLTSLPDIGKTTLLGV 186

Query: 185  QDEVLYLNFSTRKLAALGIDQRQVMQALQAQNAVTPAGMIEAGPERISVRTSGQFASEKD 244
            Q++ + + FS RKL  +G+D +QV  A++AQN V PAG +    E I++R SG   S ++
Sbjct: 187  QEQQVVIAFSPRKLNGMGLDLQQVSDAIKAQNDVVPAGSLRTDRENIALRVSGTLTSVEN 246

Query: 245  LQTVNLRINDRFFRLADIADIERGYVDPPSPMFRYNGQTAIGLAIGMKAGGNIQVFGAAL 304
            L+ + L I +RF  L ++A I     DPP+P FR NG  AIGLAI M  GGN+  FG  L
Sbjct: 247  LRAITLHIGERFIPLTELATITLQPADPPAPTFRVNGVPAIGLAISMAPGGNMLDFGKQL 306

Query: 305  KKRMDQVVQDLPVGVGVHTVSDQAVVVKQAVGGFTSALFEAVVIVLAVSFVSLGVRAGLV 364
             +RM  +   LP G+ +  V+DQ+ VVK AV GF   L EAVVIVLAVSFVSLG+RAGLV
Sbjct: 307  NQRMQTLASQLPHGITLTRVADQSSVVKNAVSGFVRILGEAVVIVLAVSFVSLGLRAGLV 366

Query: 365  VACSIPLVLAMVFVFMEYSGITMQRISLGALIIALGLLVDDAMITVEVMVTRLEMGESKE 424
            VA +IPLVLAM F  M  +GI +QRISLGALIIALGLLVDDAMITVE MV RLE G+SK 
Sbjct: 367  VAAAIPLVLAMTFTGMLLAGIGLQRISLGALIIALGLLVDDAMITVEAMVARLEAGDSKW 426

Query: 425  QAATFAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVALIVSWVVAVFF 484
            QAAT+A+ +TAFPMLTGTLV +AGF+P+G  ASSAGEY ++LF VIA+AL+ SWVVAV F
Sbjct: 427  QAATYAFKTTAFPMLTGTLVMIAGFIPVGFAASSAGEYCYSLFVVIALALLCSWVVAVIF 486

Query: 485  APVLGVHILKGDKLKAHEAEPGRVGRAFEGGLLWCMRNRWLTIIGTVVLFALAIFCMRFV 544
            +P+ G  +L    + AH + PG + R +   L   +RNR +T+   + +  ++++   F+
Sbjct: 487  SPLTGCWLLSAKHITAHPS-PGVLARTYHRLLDVILRNRLVTMGVAMAVLLVSLYATTFM 545

Query: 545  QNQFFPSSDRPEILVDLNLPQNASIEETRKVVDRFEARIKDDPDLVHWSTYIGQGAIRFY 604
            Q +FFP+SDRPE+LV L LP NA+  ET +   + E  +++D D+ ++++Y+G GAIRFY
Sbjct: 546  QGEFFPASDRPELLVSLTLPANAAQAETLRRTVQLEKMLQNDRDVANFTSYVGSGAIRFY 605

Query: 605  LPLDQQLQNPYYAQLVIVSKGFEERQAMMDRLQKILHEEFVGVGTNVQSLEMGPPVGRPI 664
            LP+D  L N   AQLV+V+K    R  +  RL++ L  +F  + T V  LE+GPPVG P+
Sbjct: 606  LPMDVLLDNENIAQLVVVAKDLTVRDRLRSRLERKLAADFNDISTRVSPLELGPPVGWPL 665

Query: 665  QYRVSGADIDQVRKHAIELATLLDQNEHIGEMIYDWNEPGKVLRVEIAQDKARQLGLSSE 724
            +YR++G D  QVR+ A  LA  L ++     +     EP +V+R+ + Q  AR  GLSS+
Sbjct: 666  KYRITGPDNAQVRQVADRLAAQLARSPLTRGVNLTAGEPERVIRLAVNQTAARAAGLSSD 725

Query: 725  DVANVMNSIVSGVQITQVNDNIYLVDVVARAEDSERGSPDTLQNLQILTPNGTSIPLLSF 784
             +A  +N+++SG  +T + D   L+DVV R +D  R   D L  L I   +G  IPL   
Sbjct: 726  TIATALNTLMSGSVVTTLRDRNRLIDVVLRGDDKARQDTDLLAGLMITNASGQKIPLRQV 785

Query: 785  ATVRYELEQPLVWRRDRKPTITIKASVNGEIQPTDLVAQLKPKIDEFASKLPVGFEVATG 844
            AT+ + ++ P++WRR R   IT++  +    +   +  QL P +    + LP G+ +  G
Sbjct: 786  ATLNWGVDDPVIWRRQRLAYITVQTDIAPGQRAEQVSQQLAPGVAALRASLPAGYGIEEG 845

Query: 845  GTVEESAKAQGPIRKVIPLMLFLMATFLMIQLHSVQKLFLVVSVAPLGLIGVVLALVPTG 904
            G   ES K  G +  ++P+ +  M   LMIQL     + L +S+AP GL G++ A++P G
Sbjct: 846  GVAAESDKGNGSVFALLPVTICAMLILLMIQLQRFSGMLLALSMAPFGLPGIISAMLPAG 905

Query: 905  TPMGFVAILGILALAGIIIRNSVILVTQIDEFEAQGLSPWDAVVEATNHRRRPILLTAAA 964
            TP+GFVA+LGI+ALAGIIIRN+VI+++++D     GL+  +A+ +A +HR RPI+LTA A
Sbjct: 906  TPLGFVALLGIIALAGIIIRNAVIMISEVDTNSRAGLAAGEAIRQAAHHRARPIVLTACA 965

Query: 965  ASLGMIPIAREVFWGPMAYAMIGGIIVATLLTLLFLPA 1002
            A LGMIPI+ +VFWGPMA A+IGG++  TL+TL  LPA
Sbjct: 966  AILGMIPISHQVFWGPMALAIIGGLVSGTLVTLTVLPA 1003